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Showing 9 records out of 369 total
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Categories: proteomics, (proteomics experiment) - Software type(s): website - database
World-2DPAGE is a public repository, standards compliant, for gel-based proteomics data published in the literature
Categories: proteomics, (similarity search/alignment), genomics, (similarity search) - Software type(s): website - tool
Protein databases query to find regions of sequence similarity quickly, with minimum loss of sensitivity.
keywords: sequence alignment
Categories: proteomics, (proteomics experiment) - Software type(s): website - tool
Computes all possible crosslinks based on proteins of interest (max. 30 proteins) for further interrogation using standard search engine (e.g. Phenyx, Mascot, Sequest, OMSSA, X!Tandem)
Categories: proteomics - Software type(s): website - tool
The XplorMed server allows you to explore a set of abstracts derived from a MEDLINE search. The system gives you the main associations between the words in groups of abstracts. Then, you can select a subset of your abstracts based on selected groups of related words and iterate your analysis on them.
Categories: proteomics, (proteomics experiment) - Software type(s): website - tool
xQuest is a search engine for cross-linked peptides from complex samples. xQuest works with small and large protein databases and features flexible fragment ion assignment, advanced scoring, and interactive evaluation tools.
Categories: proteomics, (sequence sites, features and motifs) - Software type(s): website - tool
XSTREAM is a rapid and powerful algorithm for identifying perfect and degenerate tandem repeat motifs in protein (and nucleotide) sequence data. XSTREAM also effectively models the architecture of repetitive domains in tandem repeat proteins and eliminates motif redundancy to identify "fundamental" tandem repeat patterns.
Categories: proteomics, (protein structure) - Software type(s): GUI - tool
YASARA is a molecular-graphics, -modeling and -simulation program for Windows, Linux and Mac OS X
Categories: proteomics, (protein modifications), glycomics - Software type(s): website - tool
The YinOYang WWW server produces neural network predictions for O-beta-GlcNAc attachment sites in eukaryotic protein sequences. This server can also use NetPhos, to mark possible phosphorylated sites and hence identify "Yin-Yang" sites.
Categories: genomics - Software type(s): website - tool
ZFN-Site is intended to search genomes for specific target sites and off-target sites, such as for pairs of zinc finger proteins (ZFPs), zinc finger nucleases (ZFNs) and modified homing endonucleases. This can either define a zinc finger nucleases (hetero-dimer) or allow for homo-dimers depending on the status of the checkbox in the input form.
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