UniCarb-DB

- Glycomics

- Software tool

SugarSketcher

Fast, intuitive, SNFG-compliant glycan structure drawing

- Proteins & Proteomes
- Glycomics

- Database

SugarBind

Pathogen Sugar-Binding Database

- Glycomics

- Software tool

Glynsight

Visualise and compare glycan expression profiles

- Glycomics

- Software tool

Glydin'

Network representation of known glycan determinants

- Proteins & Proteomes
- Glycomics

- Software tool

GlycoSiteAlign

Multiple alignment of sequences around glycosylation sites

- Proteins & Proteomes
- Glycomics

- Database

GlyConnect

Integrated data platform to study glycosylation

- Proteins & Proteomes
- Glycomics

- Software tool

GlycoMod

Possible oligosaccharide structures on proteins from masses

- Glycomics

- Software tool

GlyConnect Compozitor

Contextualises glycan composition sets

- Proteins & Proteomes
- Glycomics

- Database
- Software tool

Glyco@Expasy

Zooming in on web-based glycoinformatics resources

- Glycomics

- Software tool

HMO-Glycologue

Simulator of Human Milk Oligosaccharide synthesis

- Proteins & Proteomes
- Glycomics

- Database

GAG-DB

3D structures of glycosaminoglycans

- Proteins & Proteomes
- Glycomics

- Database

UniLectin

Structural and functional classification of lectins

- Proteins & Proteomes

- Software tool

MSight

Mass Spectrometry Imager

- Glycomics

- Software tool

GlycoQL

Match a glycan substructure to a database of full structures

- Proteins & Proteomes
- Glycomics

- Database

MatrixDB

Extracellular proteins and polysaccharides interactions

- Proteins & Proteomes

- Software tool

Sulfinator

Predict tyrosine sulfation sites in protein sequences

- Proteins & Proteomes

- Software tool

PeptideMass

Theoretical protein cleavage by a given enzyme

- Proteins & Proteomes
- Text mining & Machine learning

- Software tool

Myristoylator

N-terminal myristoylation of proteins by neural networks

- Proteins & Proteomes

- Software tool

FindPept

Unspecific protein cleavage from experimental masses

- Proteins & Proteomes

- Software tool

FindMod

Potential PTMs and single amino acid substitutions

- Proteins & Proteomes

- Software tool

MELANIE

2-D PAGE analysis

- Proteins & Proteomes

- Database

VenomZone

Portal to venom protein UniProtKB entries

- Proteins & Proteomes

- Database
- Software tool

neXtProt

Human protein knowledgebase

- Transcriptomics

- Database
- Software tool

ASAP

Web-based, cooperative portal for single-cell data analyses

- Systems Biology

- Database

Cellosaurus

Knowledge resource on cell lines

- Systems Biology

- Database

Cellosaurus SPARQL endpoint

SPARQL access to Cellosaurus

- Systems Biology

- Software tool

CLASTR

Cellosaurus STR similarity search tool

- Transcriptomics
- Evolution biology

- Database
- Software tool

Bgee

Gene expression expertise

- Transcriptomics
- Evolution biology

- Database

Bgee SPARQL endpoint

SPARQL access to the Bgee gene expression database

- Proteins & Proteomes
- Systems Biology

- Database
- Software tool

STRING

Protein-protein interaction networks and enrichment analysis

- Proteins & Proteomes

- Database

UniProtKB

Protein sequence database

- Proteins & Proteomes

- Database

UniProt SPARQL endpoint

SPARQL access to UniProt and related data

- Proteins & Proteomes

- Database

UniProtKB/Swiss-Prot

Protein knowledgebase

- Evolution & Phylogeny

- Database
- Software tool

OMA

Orthology inference among complete genomes

- Evolution & Phylogeny

- Database

OMA SPARQL endpoint

SPARQL access to the OMA Orthology database

- Evolution & Phylogeny

- Database

OrthoDB

Ortholog evolutionary and functional annotations

- Evolution & Phylogeny

- Database

OrthoDB SPARQL endpoint

SPARQL access to the OrthoDB catalog of orthologs

- Proteins & Proteomes
- Structural Biology

- Database

SWISS-MODEL Repository

Protein structure homology models

- Transcriptomics
- Systems Biology

- Database

SwissRegulon

Database of genome-wide annotations of regulatory sites

- Proteins & Proteomes
- Structural analysis

- Software tool

SwissTargetPrediction

Target prediction for bioactive small molecules

- Transcriptomics

- Database

PolyAsite

Database of curated RNA polyadenylation sites

- Transcriptomics
- Systems Biology

- Software tool

CRUNCH

Automated pipeline for ChIP-seq data analysis

- Proteins & Proteomes

- Database
- Software tool

PaxDb

Protein abundance across several organisms

- Genes & Genomes
- Systems Biology

- Database

cancercelllines.org

Genomic variants in human cancer cell lines

- Genomics
- Systems Biology

- Database

arrayMAP

Curated array data repository for cancer genomics

- Genomics

- Database
- Software tool

SNP2TFBS

Regulatory SNPs affecting TF binding site affinity

- Genes & Genomes
- Systems Biology

- Database

Progenetix

Genomic profiles of cancer samples with focus on CNV

- Genomics

- Database
- Software tool

EPD

Eukaryotic Promoter Database

- Genes & Genomes
- Evolution & Phylogeny

- Database
- Software tool

SwissOrthology

One-stop shop for orthologs

- Structural Biology

- Database

ModelArchive

Repository of predicted macromolecular structure models

- Transcriptomics

- Software tool

miRmap

Prediction of microRNA target repression strength

- Genes & Genomes
- Systems Biology

- Software tool

CREMA

Cis-Regulatory Element Motif Activities

- Genomics
- Evolution biology

- Database

Selectome

Database of positive selection

- Text mining & Machine learning

- Software tool

Variomes

Search engine to support the curation of genomic variants

- Proteins & Proteomes
- Metabolomics

- Database
- Software tool

MetaNetX

Metabolic network repository & analysis

- Proteins & Proteomes
- Metabolomics

- Database

MetaNetX SPARQL endpoint

SPARQL access to MetaNetX

- Proteins & Proteomes

- Database

ABCD

Database of chemically defined antibodies

- Transcriptomics

- Software tool

TagScan

Genome-wide sequence tag scanner

- Transcriptomics

- Database
- Software tool

Human Cell Atlas

Mapping the human body at the cellular level

- Transcriptomics
- Proteins & Proteomes
- Systems Biology

- Software tool

NOODAI

Multi-omics data analysis and integration

- Genes & Genomes
- Proteins & Proteomes

- Software tool

MetaGraph

Petabase-scale sequence search

- Proteins & Proteomes
- Evolution & Phylogeny

- Database
- Software tool

Orthology Benchmarking

Quest for Orthologs benchmarking service

You might also be interested in