Phylogibbs

Genomics
Systems Biology
Software tool

Phylogibbs is an algorithm for discovering regulatory sites in a collection of DNA sequences, including multiple alignments of orthologous sequences from related organisms.The algorithm uses a Gibbs sampling strategy, takes the phylogenetic relationships of the input sequences rigorously into account, and assigns realistic posterior probabilities to reported sites using a novel annealing+tracking strategy.

Browse the resource website

You might also be interested in

- Genomics
- Software tool
MADAP

Clustering tool of genomic sites
- Genomics
- Software tool
ChIP-Seq

ChIP-Seq data analysis tools
- Systems Biology
- Transcriptomics
  , Genomics
- Software tool
CRUNCH

Automated pipe-line for ChIP-seq data analysis
- Genes & Genomes
  , Genomics
  , Transcriptomics
- Evolution & Phylogeny
- Systems Biology
- Database
- Software tool
SwissRegulon Portal

Tools and data for regulatory genomics
- Genomics
  , Transcriptomics
- Proteins & Proteomes
- Systems Biology
- Software tool
ISMARA

Webservice for gene expression and epigenetic data analysis
- Genes & Genomes
- Systems Biology
- Software tool
CREMA

CREMA: Cis-Regulatory Element Motif Activities
- Transcriptomics
- Systems Biology
- Software tool
DWT-online

Dinucleotide Weight Tensor toolbox and visualisation service
- Genomics
  , Transcriptomics
- Software tool
miRmap

Prediction of microRNA target repression strength
- Genes & Genomes
- Proteins & Proteomes
- Evolution & Phylogeny
- Software tool
OMArk

OMArk determines the quality and completeness of gene sets
- Systems Biology
- Software tool
CLASTR

Cellosaurus STR similarity search tool