ViralZone

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• • • Evolution & Phylogeny

  • • Database

  OrthoDB

  Ortholog evolutionary and functional annotations
• • • Proteins & Proteomes

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  UniProtKB/Swiss-Prot

  Protein knowledgebase
• • • Proteins & Proteomes

  • • Database

  UniProtKB

  Protein sequence database
• • • Proteins & Proteomes

  • • Software tool

  HAMAP-Scan

  Scanning of protein sequences against HAMAP families
• • • Proteins & Proteomes

  • • Database
  • • Software tool

  HAMAP

  UniProtKB family classification and annotation
• • • Genes & Genomes
  • • Evolution biology

  • • Database
  • • Software tool

  SwissOrthology

  One-stop shop for orthologs
• • • Genomics

  • • Database

  TASmania

  Toxin-antitoxin database
• • • Genomics

  • • Software tool

  TASer

  Search tool associated to TASmania
• • • Evolution & Phylogeny

  • • Database

  OrthoDB SPARQL endpoint

  Evolutionary and functional annotations of orthologs
• • • Proteins & Proteomes

  • • Database

  UniProt SPARQL endpoint

  Query UniProt + related data in a powerful SQL-like language
• • • Proteins & Proteomes

  • • Database

  HAMAP SPARQL endpoint

  Use HAMAP + SPARQL to generate portable annotation pipelines
• • • Proteins & Proteomes

  • • Software tool

  ScanProsite

  Protein sequences against PROSITE
• • • Proteins & Proteomes
  • • Structural analysis

  • • Software tool

  OpenStructure

  Molecular modelling and visualisation environment
• • • Proteins & Proteomes

  • • Database

  VenomZone

  Portal to venom protein UniProtKB entries
• • • Proteins & Proteomes

  • • Software tool

  MSight

  Mass Spectrometry Imager
• • • Proteins & Proteomes

  • • Software tool

  MELANIE

  2-D PAGE analysis
• • • Glycomics

  • • Software tool

  GlyConnect Compozitor

  Contextualises glycan composition sets
• • • Proteins & Proteomes
  • • Glycomics

  • • Database

  Glyco@Expasy

  Zooming in on web-based glycoinformatics resources
• • • Systems Biology

  • • Database

  SwissBioPics

  Subcellular location visualization
• • • Genomics
  • • Proteins & Proteomes

  • • Database

  ABCD

  Database of chemically defined antibodies
• • • Glycomics

  • • Database

  SugarBind

  Pathogen Sugar-Binding Database
• • • Genomics

  • • Database

  OpenFlu

  Database for human and animal influenza virus
• • • Transcriptomics
  • • Population genetics

  • • Software tool

  V-pipe

  Viral genomics pipeline
• • • Proteins & Proteomes

  • • Database

  STRING-covid

  New COVID-19 oriented version of the STRING database
• • • Genes & Genomes
  • • Evolution & Phylogeny

  • • Software tool

  BEAST2 - COVID-19 Monitoring

  Epidemiological dynamics in real-time
• • • Text mining & Machine learning

  • • Software tool

  Computational Linguistics for COVID-19

  Central hub in computational linguistics for COVID-19
• • • Genes & Genomes
  • • Population genetics

  • • Software tool

  COVID-19 Scenarios

  Public health planning tool for COVID-19 outbreaks
• • • Transcriptomics
  • • Population genetics

  • • Software tool

  V-pipe SARS-CoV-2

  V-pipe pipeline applied to SARS-CoV-2 sequencing data
• • • Text mining & Machine learning

  • • Software tool

  COVTriage

  Rank the COVID-19 literature according to COVoc ontology
• • • Genes & Genomes

  • • Database
  • • Software tool

  SPSP | Swiss Pathogen Surveillance Platform

  A secure NGS One-health online platform
• • • Genomics
  • • Evolution biology
    • , Population genetics

  • • Software tool

  Nextclade

  Clade assignment, mutation calling & QC for virus sequences
• • • Genomics
  • • Evolution biology

  • • Database

  CoV-Spectrum

  Comprehensive dashboard to analyze SARS-CoV-2 variants