e.g. BLAST, UniProt, MSH6, Albumin...

Bonsai

  • Transcriptomics
  • Systems Biology
  • Software tool
Bonsai is a data representation method that reconstructs the tree that best captures the structure in high-dimensional data. Users can upload single cell mRNA count tables, after which the pipeline first runs Cellstates to group statistically indistinguishable cells, and Sanity to normalize the data by inferring log-transcription quotients. Bonsai will use the output of these methods, and reconstruct a tree that best represents the scRNA-seq data, which can then be browsed using Bonsai-scout.
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