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- Glycomics
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- Database
UniCarb-DB
Glycan structures and associated mass spectrometry data
GlycoSiteAlign
- Glycomics
- Proteins & Proteomes
- Software tool
GlycoSiteAlign selectively aligns amino acid sequences surrounding glycosylation sites (by default, 20 positions on each side of the glycosylated residue) depending on structural properties of the glycan attached to the site. These properties are either general (e.g., "fucosylated") or specific, such as precise composition, and are proposed in a drop-down list.
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- Proteins & Proteomes
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- Glycomics
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Swiss Mass Abacus
Intuitive calculator of peptide and glycopeptide masses-
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SugarSketcher
Fast, intuitive, SNFG-compliant glycan structure drawing-
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- Glycomics
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SugarBind
Pathogen Sugar-Binding Database-
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- Glycomics
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GlyS3
Match a glycan substructure to a database of full structures-
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- Glycomics
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Glynsight
Visualise and compare glycan expression profiles-
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- Glycomics
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- Software tool
Glydin'
Network representation of known glycan determinants-
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- Proteins & Proteomes
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- Glycomics
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- Database
GlyConnect
Integrated data platform to study glycosylation-
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- Glycomics
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- Software tool
GlycoDigest
In silico digestion of glycans by exoglycosidases-
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- Glycomics
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- Software tool
EpitopeXtractor
Compare glycan structures to Glydin' network's collection-
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- Proteins & Proteomes
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- Glycomics
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- Software tool
GlycoMod
Possible oligosaccharide structures on proteins from masses-
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- Glycomics
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- Software tool
GlyConnect Compozitor
Contextualises glycan composition sets-
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- Proteins & Proteomes
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- Glycomics
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- Database
Glyco@Expasy
Zooming in on web-based glycoinformatics resources-
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- Systems Biology
- , Glycomics
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- Software tool
HMO-Glycologue
Simulator of Human Milk Oligosaccharide synthesis-
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- Proteins & Proteomes
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- Glycomics
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- Database
GlyConnect SPARQL endpoint
SPARQL access to GlyConnect-
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- Glycomics
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- Database
GAG-DB
3D structures of glycosaminoglycans-
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- Proteins & Proteomes
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- Glycomics
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- Software tool
MzJava
Open source Java class library to process MS fragmentation-
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- Proteins & Proteomes
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- Glycomics
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- Database
UniLectin
Structural and functional classification of lectins-
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- Metabolomics
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- Software tool
MSight
Mass Spectrometry Imager-
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- Proteins & Proteomes
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- Software tool
Sulfinator
Predict tyrosine sulfation sites in protein sequences-
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- Proteins & Proteomes
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- Software tool
PeptideMass
Theoretical protein cleavage by a given enzyme-
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- Proteins & Proteomes
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- Software tool
Myristoylator
N-terminal myristoylation of proteins by neural networks-
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- Proteins & Proteomes
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- Software tool
FindPept
Unspecific protein cleavage from experimental masses-
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- Proteins & Proteomes
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- Software tool
FindMod
Potential PTMs and single amino acid substitutions-
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- Proteins & Proteomes
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- Database
UniProtKB/Swiss-Prot
Protein knowledgebase-
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- Proteins & Proteomes
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- Database
UniProtKB
Protein sequence database-
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- Proteins & Proteomes
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- Software tool
PRATT
Conserved patterns in a set of protein sequences-
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- Proteins & Proteomes
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- Software tool
HAMAP-Scan
Scanning of protein sequences against HAMAP families-
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- Proteins & Proteomes
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- Database
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- Software tool
HAMAP
UniProtKB family classification and annotation-
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- Proteins & Proteomes
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- Database
UniProt SPARQL endpoint
SPARQL access to UniProt and related data-
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- Proteins & Proteomes
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- Database
HAMAP SPARQL endpoint
SPARQL access to the HAMAP annotation rules-
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- Proteins & Proteomes
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- Database
PROSITE
Protein family and domain database-
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- Proteins & Proteomes
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- Software tool
ScanProsite
Protein sequences against PROSITE-
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- Proteins & Proteomes
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- Text mining & Machine learning
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- Database
MHC Motif Atlas
MHC Motif Atlas-