GenSpectrum

  • Genes & Genomes
  • Evolution biology
  • Software tool
Open-source software to facilitate real-time exploration of pathogen genomic sequencing data to facilitate rapid public health response.

This resource supports COVID-19 / SARS-CoV-2 research.

You might also be interested in

      • Proteins & Proteomes
      • Genes & Genomes
      • Structural Biology
      • Database

    ViralZone

    Fact sheets about viruses linked to sequence databases
      • Glycomics
      • Database

    SugarBind

    Pathogen Sugar-Binding Database
      • Population genetics
      • Genomics
      • Software tool

    V-pipe

    Viral genomics pipeline
      • Population genetics
      • Genomics
      • Software tool

    V-pipe SARS-CoV-2

    V-pipe pipeline for SARS-CoV-2 sequencing data
      • Text mining & Machine learning
      • Software tool

    COVTriage

    Rank the COVID-19 literature according to COVoc ontology
      • Genomics
      • Evolution & Phylogeny
      • Software tool

    Nextclade

    Clade assignment, mutation calling & QC for virus sequences
      • Evolution biology
      • Genes & Genomes
      • Software tool

    BEAST2

    Bayesian evolutionary analysis by sampling trees
      • Evolution & Phylogeny
      • Database

    OrthoDB

    Ortholog evolutionary and functional annotations
      • Glycomics
      • Proteins & Proteomes
      • Database

    GlyConnect

    Integrated data platform to study glycosylation
      • Evolution biology
      • Genomics
      • Software tool

    Nextstrain

    Impact of pathogen genome data on science and public health
      • Genomics
      • , Transcriptomics
      • Evolution biology
      • Software tool

    BUSCO

    From QC to gene prediction and phylogenomics
      • Evolution & Phylogeny
      • Software tool

    OrthoLoger

    Accurate and scalable inference of groups of orthologs
      • Metagenomics
      • , Genomics
      • , Genes & Genomes
      • Software tool

    mVIRs

    Prediction tool for inducible, bacteria-infecting viruses