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- Proteins & Proteomes
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- Database
ViralZone
Fact sheets about viruses linked to sequence databases
UniProt SPARQL endpoint
- Proteins & Proteomes
- Database
Use SPARQL to express queries across diverse data sources, such as UniProt and its supporting datasets as well as other databases that provide this technology. This allows powerful queries as if the queried databases were installed locally.
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Protein sequence database-
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SwissOrthology
One-stop shop for orthologs-
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TASer
Search tool associated to TASmania-
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OrthoDB SPARQL endpoint
Evolutionary and functional annotations of orthologs-
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HAMAP SPARQL endpoint
Use HAMAP + SPARQL to generate portable annotation pipelines-
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ScanProsite
Protein sequences against PROSITE-
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Human protein knowledgebase-
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rawrr
R package for fast reading Thermo Fisher Scientific MS data-
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neXtProt SPARQL endpoint
SPARQL endpoint for the neXtProt Human protein knowledgebase-
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Personalized Information Retrieval in biomedical literature-
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STRING
Protein-protein interaction networks and enrichment analysis-
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Glydin'
Network representation of known glycan determinants-
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Compare glycan structures to Glydin' network's collection-
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SwissLipids
Knowledge resource for lipids-
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Rhea
Expert-curated database of biochemical reactions-
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Roche Biochemical Pathways-
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ENZYME
Enzyme nomenclature database-
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Rhea SPARQL endpoint
SPARQL access to the Rhea DB-
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HMO-Glycologue
Simulator of Human Milk Oligosaccharide synthesis-
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SwissLipids SPARQL endpoint
SPARQL access to the SwissLipids knowledgebase-
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Bgee
Gene expression expertise-
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Bgee SPARQL endpoint
Gene expression expertise-
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Variomes
Search engine to support the curation of genomic variants-
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Glittr
Git repositories with bioinformatics training material-
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GlycoSiteAlign
Multiple alignment of sequences around glycosylation sites-
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GlyConnect
Integrated data platform to study glycosylation-
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PRATT
Conserved patterns in a set of protein sequences-
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PROSITE
Protein family and domain database-
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GlyConnect SPARQL endpoint
SPARQL access to GlyConnect-
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MHC Motif Atlas
MHC Motif Atlas-