Genes & Genomes , Genomics , Transcriptomics Evolution biology Database Software tool Bgee Gene expression expertise
Evolution & Phylogeny Database Software tool OMA SPARQL endpoint Orthology inference among complete genomes
Proteins & Proteomes Glycomics Database Software tool GlyConnect Integrated data platform to study glycosylation
Proteins & Proteomes Database World-2DPAGE Repository Repository for published gel-based proteomics data
Population genetics Systems Biology Software tool CRUNCH Automated pipe-line for ChIP-seq data analysis
Proteins & Proteomes Database UniProt SPARQL endpoint Query UniProt + related data in a powerful SQL-like language
Proteins & Proteomes Structural Biology Database SWISS-MODEL Repository Protein structure homology models
Genomics , Transcriptomics Proteins & Proteomes Software tool Translate Nucleotide sequence to a protein sequence
Genomics Systems Biology Database Software tool arrayMAP Curated array data repository for cancer genomics
Genomics , Transcriptomics Systems Biology Database SwissRegulon Database of genome-wide annotations of regulatory sites
Genes & Genomes , Genomics Systems Biology Database Software tool iPtgxDBs Platform for integrated proteogenomics databases
Proteins & Proteomes Database World-2DPAGE Constellation Entry point to 2D page analysis tools and databases
Text mining & Machine learning Software tool Computational Linguistics for COVID-19 Central hub in computational linguistics for COVID-19
Proteins & Proteomes Systems Biology Database Software tool MetaNetX Metabolic network repository & analysis
Proteins & Proteomes Glycomics Software tool Swiss Mass Abacus Intuitive calculator of peptide and glycopeptide masses
Proteins & Proteomes Structural Biology , Medicinal chemistry , Structural analysis Software tool Click2Drug Directory of computational drug design tools
Genomics , Transcriptomics Software tool ASAP Web-based, cooperative portal for single-cell data analyses
Proteins & Proteomes Medicinal chemistry Software tool SwissADME Pharmacokinetics properties and druglikeness
Population genetics Software tool Arlequin An integrated software for population genetics data analysis
Proteins & Proteomes Glycomics Software tool MzJava Open source Java class library to process MS fragmentation
Genomics Evolution biology , Population genetics Software tool fastsimcoal Fast sequential Markov coalescent simulation of genomic data
Proteins & Proteomes Glycomics Software tool GlycoMod Possible oligosaccharide structures on proteins from masses
Proteins & Proteomes Structural analysis Software tool OpenStructure Molecular modelling and visualisation environment
Proteins & Proteomes Structural analysis Software tool Swiss-PdbViewer Display, analyse and superimpose protein 3D structures
Evolution biology Software tool Nextstrain Impact of pathogen genome data on science and public health
Genes & Genomes Proteins & Proteomes Evolution & Phylogeny , Evolution biology Software tool OrthoLoger Accurate and scalable inference of groups of orthologs
Proteins & Proteomes Glycomics Software tool GlycoSiteAlign Multiple alignment of sequences around glycosylation sites
Proteins & Proteomes Medicinal chemistry , Structural analysis Database SwissBioIsostere Database of molecular replacements for ligand design
Proteins & Proteomes Software tool UniProt BLAST BLAST sequence similarity search on the UniProt web site
Evolution & Phylogeny Database OrthoDB SPARQL endpoint Evolutionary and functional annotations of orthologs
Medicinal chemistry , Structural analysis Database SwissSidechain Database of non-natural amino acid side chains
Genomics , Metagenomics , Transcriptomics Population genetics Software tool mOTUs Microbial abundance and population genomic profiler
Genomics Systems Biology Database Software tool Progenetix Genomic profiles of cancer samples with focus on CNV
Genomics Evolution & Phylogeny Software tool Newick Utilities High-throughput phylogenetic tree processing
Proteins & Proteomes Metabolomics Software tool rawrr R package for fast reading Thermo Fisher Scientific MS data.
Genes & Genomes Evolution & Phylogeny Software tool BEAST2 - COVID-19 Monitoring Epidemiological dynamics in real-time
Proteins & Proteomes Software tool Myristoylator N-terminal myristoylation of proteins by neural networks.
Genomics Evolution & Phylogeny Database Corona OMA Browser The OMA Browser, for 119 Nidovirales species
Proteins & Proteomes Software tool Compute pI/MW Isoelectric point and molecular weight from protein sequence
Proteins & Proteomes Medicinal chemistry , Structural analysis Software tool SwissParam Topology and parameters for small molecules
Proteins & Proteomes Structural Biology , Medicinal chemistry Software tool SwissDock Docking of small ligands into protein active sites
Genomics Proteins & Proteomes Structural analysis Software tool COILS Prediction of coiled coil regions in proteins
Proteins & Proteomes Glycomics Database UniLectin Structural and functional classification of lectins
Proteins & Proteomes Software tool pIcarver Theoretical distributions of peptide pI on a given pH range
Proteins & Proteomes Medicinal chemistry , Structural analysis Software tool SwissTargetPrediction Target prediction for bioactive small molecules
Transcriptomics Population genetics Software tool V-pipe SARS-CoV-2 V-pipe pipeline applied to SARS-CoV-2 sequencing data
Proteins & Proteomes Systems Biology Database TCS Predict interaction specificity in bacterial signalling
Genes & Genomes Database Software tool SPSP | Swiss Pathogen Surveillance Platform A secure NGS One-health online platform
Genomics Proteins & Proteomes Software tool SIB COVID-19 Integrated Knowledgebase Integrated data relevant for research on SARS-CoV-2
Genomics , Transcriptomics Software tool tromer Prediction of transcribed regions and splice junctions
Proteins & Proteomes Database HAMAP SPARQL endpoint Use HAMAP + SPARQL to generate portable annotation pipelines
Genes & Genomes , Genomics , Transcriptomics Evolution biology Database Software tool Bgee SPARQL endpoint Gene expression expertise
Proteins & Proteomes Structural analysis Software tool MARCOIL Coiled-coil regions in protein sequences
Proteins & Proteomes Software tool ProtScale Profile produced by amino acids scales on protein sequences
Proteins & Proteomes Structural analysis Software tool TMPred Prediction of trans-membrane regions in protein sequences
Proteins & Proteomes Structural Biology , Structural analysis Software tool SWISS-MODEL Workspace Fully automated protein structure homology-modeling server
Proteins & Proteomes Database Software tool MyHits Relationships between protein sequences and motifs
Text mining & Machine learning Software tool CovidTriage Rank the COVID-19 literature according to COVoc ontology
Genomics , Transcriptomics Proteins & Proteomes Systems Biology Software tool ISMARA Genome-wide annotations of regulatory sites
Proteins & Proteomes Software tool neXtProt SPARQL endpoint SPARQL endpoint for the neXtProt Human protein knowledgebase
Genes & Genomes Population genetics Software tool COVID-19 Scenarios Public health planning tool for COVID-19 outbreaks
Text mining & Machine learning Database Software tool SIBiLS Personalized Information Retrieval in biomedical literature