38 resources found for Training material

• • • Proteins & Proteomes

  • • Database

  UniProtKB

  Protein sequence database
• • • Proteins & Proteomes
  • • Medicinal chemistry

  • • Software tool

  SwissDock

  Docking of small ligands into protein active sites
• • • Genes & Genomes
  • • Proteins & Proteomes
  • • Structural Biology

  • • Database

  ViralZone

  Knowledgebase on virus biology and viral proteins
• • • Transcriptomics
  • • Evolution biology

  • • Database
  • • Software tool

  Bgee

  Gene expression expertise
• • • Proteins & Proteomes
  • • Systems Biology

  • • Database
  • • Software tool

  STRING

  Protein-protein interaction networks and enrichment analysis
• • • Evolution & Phylogeny

  • • Database
  • • Software tool

  OMA

  Orthology inference among complete genomes
• • • Proteins & Proteomes
  • • Metabolomics

  • • Database
  • • Software tool

  MetaNetX

  Metabolic network repository & analysis
• • • Systems Biology

  • • Database

  Cellosaurus

  Knowledge resource on cell lines
• • • Genomics
  • • Population genetics

  • • Software tool

  V-pipe

  Viral genomic variant detection pipeline
• • • Medicinal chemistry

  • • Software tool

  SwissSimilarity

  Ligand-based virtual screening
• • • Structural analysis

  • • Software tool

  SwissParam

  Topology and parameters for small molecules
• • • Proteins & Proteomes
  • • Structural analysis

  • • Database

  SwissBioIsostere

  Database of molecular replacements for ligand design
• • • Genomics

  • • Software tool

  SSA

  Analysis of nucleic acid sequence motifs
• • • Structural analysis

  • • Software tool

  OpenStructure

  Molecular modelling and visualisation environment
• • • Genomics
  • • Evolution biology

  • • Software tool

  Nextstrain

  Real-time tracking of pathogen evolution
• • • Metagenomics
  • • Population genetics

  • • Database
  • • Software tool

  mOTUs

  Microbial taxonomic and population genomic profiler
• • • Proteins & Proteomes
  • • Glycomics

  • • Database

  GlyConnect

  Integrated data platform to study glycosylation
• • • Proteins & Proteomes

  • • Database

  UniProtKB/Swiss-Prot

  Protein knowledgebase
• • • Proteins & Proteomes
  • • Metabolomics

  • • Database

  Rhea

  Expert-curated database of biochemical reactions
• • • Genomics

  • • Database
  • • Software tool

  ChIP-Seq

  ChIP-Seq data analysis tools
• • • Proteins & Proteomes
  • • Structural analysis

  • • Software tool

  SWISS-MODEL Workspace

  Fully automated protein structure homology-modeling server
• • • Transcriptomics
  • • Systems Biology

  • • Software tool

  ISA

  Finding modules in gene expression data
• • • Transcriptomics
  • • Systems Biology

  • • Software tool

  ExpressionView

  Biclusters identified in gene expression data
• • • Transcriptomics
  • • Systems Biology

  • • Software tool

  ISMARA

  Webservice for gene expression and epigenetic data analysis
• • • Genes & Genomes
  • • Evolution & Phylogeny

  • • Database
  • • Software tool

  SwissOrthology

  One-stop shop for orthologs
• • • Proteins & Proteomes
  • • Structural Biology

  • • Database
  • • Software tool

  SWISS-MODEL

  Protein structure homology-modelling
• • • Genomics
  • • Population genetics

  • • Software tool

  V-pipe SARS-CoV-2

  V-pipe pipeline for SARS-CoV-2 sequencing data
• • • Transcriptomics
  • • Evolution biology

  • • Database

  Bgee SPARQL endpoint

  SPARQL access to the Bgee gene expression database
• • • Proteins & Proteomes

  • • Database

  UniProt SPARQL endpoint

  SPARQL access to UniProt and related data
• • • Transcriptomics

  • • Database
  • • Software tool

  ASAP

  Web-based, cooperative portal for single-cell data analyses
• • • Proteins & Proteomes
  • • Metabolomics

  • • Database

  Rhea SPARQL endpoint

  SPARQL access to the Rhea knowledgebase
• • • Text mining & Machine learning

  • • Software tool

  Variomes

  Search engine to support the curation of genomic variants
• • • Evolution biology
  • • Systems Biology
  • • Text mining & Machine learning

  • • Software tool

  CAPTAIN

  Decision-support tool for conservation area prioritization
• • • Transcriptomics

  • • Database

  Glittr

  Git repositories with bioinformatics training material
• • • Genes & Genomes
  • • Evolution biology

  • • Software tool

  BEAST2

  Statistical framework for pathogen genome evolution analysis
• • • Transcriptomics
  • • Systems Biology

  • • Software tool

  Bonsai

  Analysis of single cell RNA-seq data
• • • Structural Biology
  • • Systems Biology

  • • Software tool

  SimuCell3D

  Tissue simulation in 3D
• • • Evolution & Phylogeny

  • • Software tool

  FastOMA

  Orthology inference at scale