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- Proteins & Proteomes
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- Database
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- Software tool
HAMAP
UniProtKB family classification and annotation
Structural Biology
Protein structure homology models
Repository of predicted macromolecular structure models
Docking of small ligands into protein active sites
System Biology
Metabolic network repository & analysis
Knowledge resource on cell lines
Genes & Genomes
Gene expression expertise
Evolution & Phylogeny
Orthology inference among complete genomes
Ortholog evolutionary and functional annotations
Database of positive selection
Proteins & Proteomes
Protein family and domain database
Protein-protein interaction networks and enrichment analysis
Protein sequence database
Fact sheets about viruses linked to sequence databases
Enzyme nomenclature database
UniProtKB family classification and annotation
Relationships between protein sequences and motifs
Knowledge resource for lipids
Portal to venom protein UniProtKB entries
Interactive, annotated similarity network of all proteins
Search results: database and tool description
25 resources found for Workflows
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- Genomics
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- Population genetics
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- Software tool
V-pipe
Viral genomics pipeline -
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- Structural analysis
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- Software tool
SwissParam
Topology and parameters for small molecules -
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- Genomics
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- Software tool
ShoRAH
Analysis of NGS data -
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- Genes & Genomes
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- Evolution & Phylogeny
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- Software tool
REALPHY
Inference of phylogenetic trees from genome data -
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- Structural analysis
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- Software tool
OpenStructure
Molecular modelling and visualisation environment -
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- Genomics
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- Evolution biology
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- Software tool
Nextstrain
Impact of pathogen genome data on science and public health -
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- Proteins & Proteomes
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- Software tool
MSight
Mass Spectrometry Imager -
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- Proteins & Proteomes
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- Software tool
MELANIE
2-D PAGE analysis -
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- Proteins & Proteomes
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- Software tool
HAMAP-Scan
Scanning of protein sequences against HAMAP families -
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- Transcriptomics
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- Systems Biology
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- Software tool
CRUNCH
Automated pipeline for ChIP-seq data analysis -
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- Proteins & Proteomes
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- Structural analysis
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- Software tool
SWISS-MODEL Workspace
Fully automated protein structure homology-modeling server -
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- Transcriptomics
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- Systems Biology
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- Software tool
ISMARA
Webservice for gene expression and epigenetic data analysis -
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- Genomics
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- Systems Biology
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- Software tool
Phylogibbs
Regulatory sites in a collection of DNA sequences -
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- Genomics
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- Population genetics
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- Software tool
V-pipe SARS-CoV-2
V-pipe pipeline for SARS-CoV-2 sequencing data -
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- Metagenomics
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- Software tool
LEMMI
Continuous benchmarking of methods for metagenomics -
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- Proteins & Proteomes
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- Database
HAMAP SPARQL endpoint
SPARQL access to the HAMAP annotation rules -
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- Transcriptomics
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- Software tool
ASAP
Web-based, cooperative portal for single-cell data analyses -
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- Text mining & Machine learning
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- Database
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- Software tool
SIBiLS
Personalized information retrieval from the literature -
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- Evolution & Phylogeny
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- Software tool
raxmlGUI
raxmlGUI 2.0 is a graphical user interface to RAxML -
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- Genomics
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- Evolution & Phylogeny
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- Software tool
Nextclade
Clade assignment, mutation calling & QC for virus sequences -
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- Proteins & Proteomes
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- Structural Biology
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- Database
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- Software tool
CAMEO
Weekly automated benchmarking of protein structure modelling -
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- Genes & Genomes
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- Systems Biology
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- Software tool
CREMA
Cis-Regulatory Element Motif Activities -
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- Transcriptomics
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- Systems Biology
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- Software tool
DWT-online
Dinucleotide Weight Tensor toolbox and visualisation service -
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- Proteins & Proteomes
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- Software tool
prolfqua
R package for protein differential expression analysis -