77 resources found for Computational%20chemistry

• • • Proteins & Proteomes

  • • Database

  UniProtKB

  Protein sequence database
• • • Proteins & Proteomes
  • • Structural Biology

  • • Database

  SWISS-MODEL Repository

  Protein structure homology models
• • • Proteins & Proteomes

  • • Database

  ENZYME

  Enzyme nomenclature database
• • • Genes & Genomes
  • • Proteins & Proteomes
  • • Structural Biology

  • • Database

  ViralZone

  Factsheets about viruses linked to sequence databases
• • • Proteins & Proteomes
  • • Systems Biology

  • • Database
  • • Software tool

  STRING

  Protein-protein interaction networks and enrichment analysis
• • • Evolution & Phylogeny

  • • Database

  OrthoDB

  Ortholog evolutionary and functional annotations
• • • Evolution & Phylogeny

  • • Database
  • • Software tool

  OMA

  Orthology inference among complete genomes
• • • Proteins & Proteomes
  • • Lipidomics

  • • Database

  SwissLipids

  Knowledge resource for lipids
• • • Proteins & Proteomes
  • • Metabolomics

  • • Database
  • • Software tool

  MetaNetX

  Metabolic network repository & analysis
• • • Genomics
  • • Population genetics

  • • Software tool

  V-pipe

  Viral genomics pipeline
• • • Population genetics

  • • Software tool

  Arlequin

  An integrated software for population genetics data analysis
• • • Genomics

  • • Database
  • • Software tool

  EPD

  Eukaryotic Promoter Database
• • • Transcriptomics

  • • Software tool

  TagScan

  Genome-wide sequence tag scanner
• • • Structural analysis

  • • Software tool

  SwissParam

  Topology and parameters for small molecules
• • • Genomics

  • • Software tool

  SSA

  Analysis of nucleic acid sequence motifs
• • • Genomics

  • • Database
  • • Software tool

  SNP2TFBS

  Regulatory SNPs affecting TF binding site affinity
• • • Transcriptomics

  • • Software tool

  SIBsim4

  Align expressed RNA sequences on a DNA template
• • • Genomics

  • • Software tool

  ShoRAH

  Analysis of NGS data
• • • Genes & Genomes
  • • Evolution & Phylogeny

  • • Software tool

  REALPHY

  Inference of phylogenetic trees from genome data
• • • Transcriptomics

  • • Software tool

  QuasR

  Quantification and analysis of Short Reads
• • • Proteins & Proteomes
  • • Structural analysis

  • • Software tool

  QMEAN

  Protein model quality estimation
• • • Proteins & Proteomes

  • • Software tool

  pftools

  Build, calibrate, and search biological sequences
• • • Structural analysis

  • • Software tool

  OpenStructure

  Molecular modelling and visualisation environment
• • • Genomics
  • • Evolution biology

  • • Software tool

  Nextstrain

  Impact of pathogen genome data on science and public health
• • • Transcriptomics

  • • Software tool

  miRmap

  Prediction of microRNA target repression strength
• • • Genomics

  • • Software tool

  MADAP

  Clustering tool of genomic sites
• • • Transcriptomics

  • • Software tool

  FetchGWI / tagger

  Short sequence mapping
• • • Genomics
  • • Population genetics

  • • Software tool

  fastsimcoal

  Fast sequential Markov coalescent simulation of genomic data
• • • Genomics

  • • Software tool

  FastEpistasis

  Tool for quantitative trait epistasis
• • • Transcriptomics
  • • Evolution biology

  • • Software tool

  BUSCO

  From QC to gene prediction and phylogenomics
• • • Proteins & Proteomes

  • • Database

  UniProtKB/Swiss-Prot

  Protein knowledgebase
• • • Proteins & Proteomes
  • • Metabolomics

  • • Database

  Rhea

  Expert-curated database of biochemical reactions
• • • Proteins & Proteomes

  • • Software tool

  ProtParam

  Computation of physico chemical parameters of a protein
• • • Proteins & Proteomes

  • • Software tool

  HAMAP-Scan

  Scanning of protein sequences against HAMAP families
• • • Proteins & Proteomes

  • • Software tool

  UniProt BLAST

  BLAST sequence similarity search on the UniProt web site
• • • Genomics

  • • Database
  • • Software tool

  ChIP-Seq

  ChIP-Seq data analysis tools
• • • Proteins & Proteomes
  • • Structural analysis

  • • Database

  Click2Drug

  Directory of computational drug design tools
• • • Proteins & Proteomes

  • • Software tool

  Dotlet

  Regions of close similarity in 2 sequences
• • • Proteins & Proteomes
  • • Structural analysis

  • • Software tool

  SWISS-MODEL Workspace

  Fully automated protein structure homology-modeling server
• • • Proteins & Proteomes
  • • Systems Biology

  • • Database

  TCS

  Predict interaction specificity in bacterial signalling
• • • Genomics
  • • Evolution biology

  • • Software tool

  CT-CBN

  Estimate conjunctive Bayesian networks
• • • Transcriptomics
  • • Systems Biology

  • • Software tool

  ISA

  Finding modules in gene expression data
• • • Transcriptomics
  • • Systems Biology

  • • Software tool

  ExpressionView

  Biclusters identified in gene expression data
• • • Proteins & Proteomes

  • • Software tool

  ScanProsite

  Protein sequences against PROSITE
• • • Genes & Genomes
  • • Evolution & Phylogeny

  • • Database
  • • Software tool

  SwissOrthology

  One-stop shop for orthologs
• • • Transcriptomics
  • • Evolution & Phylogeny
  • • Systems Biology

  • • Database
  • • Software tool

  SwissRegulon Portal

  Tools and data for regulatory genomics
• • • Proteins & Proteomes
  • • Structural Biology

  • • Database
  • • Software tool

  SWISS-MODEL

  Protein structure homology-modelling
• • • Genomics
  • • Population genetics

  • • Software tool

  V-pipe SARS-CoV-2

  V-pipe pipeline for SARS-CoV-2 sequencing data
• • • Genomics

  • • Database

  TASmania

  Toxin-antitoxin database
• • • Genomics

  • • Software tool

  TASer

  Search tool associated to TASmania
• • • Evolution & Phylogeny

  • • Database

  OrthoDB SPARQL endpoint

  SPARQL access to the OrthoDB catalog of orthologs
• • • Metagenomics

  • • Software tool

  LEMMI

  Continuous benchmarking of methods for metagenomics
• • • Proteins & Proteomes

  • • Database

  UniProt SPARQL endpoint

  SPARQL access to UniProt and related data
• • • Evolution & Phylogeny

  • • Software tool

  OrthoLoger

  Accurate and scalable inference of groups of orthologs
• • • Proteins & Proteomes
  • • Metabolomics

  • • Database

  Rhea SPARQL endpoint

  SPARQL access to the Rhea knowledgebase
• • • Evolution & Phylogeny

  • • Software tool

  raxmlGUI

  raxmlGUI 2.0 is a graphical user interface to RAxML
• • • Glycomics

  • • Software tool

  HMO-Glycologue

  Simulator of Human Milk Oligosaccharide synthesis
• • • Metagenomics

  • • Software tool

  mVIRs

  Prediction tool for inducible, bacteria-infecting viruses
• • • Systems Biology

  • • Software tool

  OMAMO

  OMAMO allows the user to find the best simple model organism
• • • Genomics
  • • Evolution & Phylogeny

  • • Software tool

  Nextclade

  Clade assignment, mutation calling & QC for virus sequences
• • • Proteins & Proteomes
  • • Lipidomics

  • • Database

  SwissLipids SPARQL endpoint

  SPARQL access to the SwissLipids knowledgebase
• • • Proteins & Proteomes
  • • Metabolomics

  • • Database

  MetaNetX SPARQL endpoint

  SPARQL access to MetaNetX
• • • Structural Biology

  • • Database

  ModelArchive

  Repository of predicted macromolecular structure models
• • • Proteins & Proteomes
  • • Structural Biology

  • • Database
  • • Software tool

  CAMEO

  Weekly automated benchmarking of protein structure modelling
• • • Evolution biology
  • • Systems Biology
  • • Text mining & Machine learning

  • • Software tool

  CAPTAIN

  Decision-support tool for conservation area prioritization
• • • Transcriptomics

  • • Database

  Glittr

  Git repositories with bioinformatics training material
• • • Genes & Genomes
  • • Evolution biology

  • • Software tool

  BEAST2

  Bayesian evolutionary analysis by sampling trees
• • • Genomics
  • • Evolution biology

  • • Software tool

  GenSpectrum

  Real-time pathogen genomic sequence analysis
• • • Proteins & Proteomes
  • • Systems Biology

  • • Database

  Protein Universe Atlas

  Interactive, annotated similarity network of all proteins
• • • Genomics

  • • Database

  Pathoplexus

  Human viral pathogen genomic data sharing platform
• • • Proteins & Proteomes
  • • Glycomics

  • • Database

  MatrixDB

  Extracellular proteins and polysaccharides interactions
• • • Transcriptomics
  • • Systems Biology

  • • Software tool

  Bonsai

  Analysis of single cell RNA-seq data
• • • Structural Biology
  • • Systems Biology

  • • Software tool

  SimuCell3D

  Tissue simulation in 3D
• • • Structural Biology
  • • Systems Biology

  • • Software tool

  PolyHoop

  Cell and tissue dynamics simulation in 2D
• • • Evolution biology
  • • Systems Biology

  • • Database

  MoultDB

  Integrative resource on moulting in arthropods
• • • Genomics

  • • Software tool

  Loculus

  Powering microbial genome databases
• • • Transcriptomics
  • • Proteins & Proteomes
  • • Systems Biology

  • • Software tool

  NOODAI

  Multi-omics data analysis and integration