Search results: database and tool description

86 resources found for Bioinformatics

      • Proteins & Proteomes
      • Database

    UniProtKB

    Protein sequence database
      • Genomics
      • Evolution biology
      • Database

    Selectome

    Database of positive selection
      • Proteins & Proteomes
      • Database

    PROSITE

    Protein family and domain database
      • Proteins & Proteomes
      • Medicinal chemistry
      • Software tool

    SwissDock

    Docking of small ligands into protein active sites
      • Proteins & Proteomes
      • Database

    ENZYME

    Enzyme nomenclature database
      • Proteins & Proteomes
      • Database
      • Software tool

    HAMAP

    UniProtKB family classification and annotation
      • Genes & Genomes
      • Proteins & Proteomes
      • Structural Biology
      • Database

    ViralZone

    Fact sheets about viruses linked to sequence databases
      • Transcriptomics
      • Evolution biology
      • Database
      • Software tool

    Bgee

    Gene expression expertise
      • Proteins & Proteomes
      • Systems Biology
      • Database
      • Software tool

    STRING

    Protein-protein interaction networks and enrichment analysis
      • Evolution & Phylogeny
      • Database

    OrthoDB

    Ortholog evolutionary and functional annotations
      • Evolution & Phylogeny
      • Database
      • Software tool

    OMA

    Orthology inference among complete genomes
      • Proteins & Proteomes
      • Lipidomics
      • Database

    SwissLipids

    Knowledge resource for lipids
      • Proteins & Proteomes
      • Database

    VenomZone

    Portal to venom protein UniProtKB entries
      • Systems Biology
      • Database

    Cellosaurus

    Knowledge resource on cell lines
      • Genomics
      • Population genetics
      • Software tool

    V-pipe

    Viral genomics pipeline
      • Proteins & Proteomes
      • Glycomics
      • Database

    UniLectin

    Structural and functional classification of lectins
      • Proteins & Proteomes
      • Structural analysis
      • Software tool

    SwissTargetPrediction

    Target prediction for bioactive small molecules
      • Proteins & Proteomes
      • Structural analysis
      • Database

    SwissSidechain

    Database of non-natural amino acid side chains
      • Transcriptomics
      • Systems Biology
      • Database

    SwissRegulon

    Database of genome-wide annotations of regulatory sites
      • Structural analysis
      • Software tool

    SwissParam

    Topology and parameters for small molecules
      • Proteins & Proteomes
      • Structural analysis
      • Database

    SwissBioIsostere

    Database of molecular replacements for ligand design
      • Medicinal chemistry
      • Software tool

    SwissADME

    Pharmacokinetics properties and druglikeness
      • Genes & Genomes
      • Evolution & Phylogeny
      • Software tool

    REALPHY

    Inference of phylogenetic trees from genome data
      • Proteins & Proteomes
      • Database
      • Software tool

    PaxDb

    Protein abundance across several organisms
      • Structural analysis
      • Software tool

    OpenStructure

    Molecular modelling and visualisation environment
      • Genomics
      • Evolution biology
      • Software tool

    Nextstrain

    Impact of pathogen genome data on science and public health
      • Genomics
      • Systems Biology
      • Database
      • Software tool

    arrayMAP

    Curated array data repository for cancer genomics
      • Proteins & Proteomes
      • Software tool

    MSight

    Mass Spectrometry Imager
      • Metagenomics
      • Population genetics
      • Database
      • Software tool

    mOTUs

    Microbial taxonomic and population genomic profiler
      • Genomics
      • Systems Biology
      • Database
      • Software tool

    iPtgxDBs

    Platform for integrated proteogenomics databases
      • Proteins & Proteomes
      • Software tool

    MELANIE

    2-D PAGE analysis
      • Proteins & Proteomes
      • Glycomics
      • Database

    GlyConnect

    Integrated data platform to study glycosylation
      • Transcriptomics
      • Evolution biology
      • Software tool

    BUSCO

    From QC to gene prediction and phylogenomics
      • Transcriptomics
      • Proteins & Proteomes
      • Software tool

    Translate

    Convert a nucleotide sequence to a protein sequence
      • Proteins & Proteomes
      • Software tool

    Sulfinator

    Predict tyrosine sulfation sites in protein sequences
      • Proteins & Proteomes
      • Software tool

    SIM

    Alignment of two protein sequences or within a sequence
      • Proteins & Proteomes
      • Metabolomics
      • Database

    Rhea

    Expert-curated database of biochemical reactions
      • Proteins & Proteomes
      • Software tool

    RandSeq

    Random protein sequence generator
      • Proteins & Proteomes
      • Software tool

    ProtScale

    Profile produced by amino acids scales on protein sequences
      • Proteins & Proteomes
      • Software tool

    ProtParam

    Computation of physico chemical parameters of a protein
      • Proteins & Proteomes
      • Software tool

    PRATT

    Conserved patterns in a set of protein sequences
      • Proteins & Proteomes
      • Software tool

    PeptideMass

    Theoretical protein cleavage by a given enzyme
      • Proteins & Proteomes
      • Software tool

    PeptideCutter

    Potential cleavage sites in a protein
      • Proteins & Proteomes
      • Software tool

    Myristoylator

    N-terminal myristoylation of proteins by neural networks
      • Proteins & Proteomes
      • Software tool

    MALDIPepQuant

    Quantify MALDI peptides from Phenyx output
      • Proteins & Proteomes
      • Software tool

    HAMAP-Scan

    Scanning of protein sequences against HAMAP families
      • Proteins & Proteomes
      • Software tool

    FindPept

    Unspecific protein cleavage from experimental masses
      • Proteins & Proteomes
      • Software tool

    FindMod

    Potential PTMs and single amino acid substitutions
      • Transcriptomics
      • Systems Biology
      • Software tool

    CRUNCH

    Automated pipeline for ChIP-seq data analysis
      • Proteins & Proteomes
      • Structural analysis
      • Software tool

    SWISS-MODEL Workspace

    Fully automated protein structure homology-modeling server
      • Transcriptomics
      • Systems Biology
      • Software tool

    ISMARA

    Webservice for gene expression and epigenetic data analysis
      • Genomics
      • Systems Biology
      • Software tool

    Phylogibbs

    Regulatory sites in a collection of DNA sequences
      • Proteins & Proteomes
      • Software tool

    ScanProsite

    Protein sequences against PROSITE
      • Genes & Genomes
      • Evolution & Phylogeny
      • Database
      • Software tool

    SwissOrthology

    One-stop shop for orthologs
      • Medicinal chemistry
      • Database
      • Software tool

    SwissDrugDesign

    Widening access to computer-aided drug design
      • Transcriptomics
      • Evolution & Phylogeny
      • Systems Biology
      • Database
      • Software tool

    SwissRegulon Portal

    Tools and data for regulatory genomics
      • Proteins & Proteomes
      • Structural Biology
      • Database
      • Software tool

    SWISS-MODEL

    Protein structure homology-modelling
      • Genomics
      • Population genetics
      • Software tool

    V-pipe SARS-CoV-2

    V-pipe pipeline for SARS-CoV-2 sequencing data
      • Text mining & Machine learning
      • Software tool

    COVTriage

    Rank the COVID-19 literature according to COVoc ontology
      • Genomics
      • Database

    TASmania

    Toxin-antitoxin database
      • Genomics
      • Software tool

    TASer

    Search tool associated to TASmania
      • Transcriptomics
      • Evolution biology
      • Database

    Bgee SPARQL endpoint

    SPARQL access to the Bgee gene expression database
      • Transcriptomics
      • Software tool

    ASAP

    Web-based, cooperative portal for single-cell data analyses
      • Text mining & Machine learning
      • Database
      • Software tool

    SIBiLS

    Personalized information retrieval from the literature
      • Proteins & Proteomes
      • Glycomics
      • Database

    Glyco@Expasy

    Zooming in on web-based glycoinformatics resources
      • Genomics
      • Evolution & Phylogeny
      • Software tool

    Nextclade

    Clade assignment, mutation calling & QC for virus sequences
      • Systems Biology
      • Database

    SwissBioPics

    Subcellular location visualization
      • Structural Biology
      • Database

    ModelArchive

    Repository of predicted macromolecular structure models
      • Proteins & Proteomes
      • Structural Biology
      • Database
      • Software tool

    CAMEO

    Weekly automated benchmarking of protein structure modelling
      • Transcriptomics
      • Database

    Glittr

    Git repositories with bioinformatics training material
      • Genes & Genomes
      • Systems Biology
      • Software tool

    CREMA

    Cis-Regulatory Element Motif Activities
      • Transcriptomics
      • Systems Biology
      • Software tool

    DWT-online

    Dinucleotide Weight Tensor toolbox and visualisation service
      • Genes & Genomes
      • Evolution biology
      • Software tool

    BEAST2

    Bayesian evolutionary analysis by sampling trees
      • Proteins & Proteomes
      • Systems Biology
      • Database

    Protein Universe Atlas

    Interactive, annotated similarity network of all proteins
      • Proteins & Proteomes
      • Database

    EnzChemRED

    Enzyme Chemistry Relation Extraction Dataset