92 resources found for Bioinformatics

• • • Proteins & Proteomes

  • • Database

  UniProtKB

  Protein sequence database
• • • Genomics
  • • Evolution biology

  • • Database

  Selectome

  Database of positive selection
• • • Proteins & Proteomes

  • • Database

  PROSITE

  Protein family and domain database
• • • Proteins & Proteomes
  • • Structural Biology

  • • Database

  SWISS-MODEL Repository

  Protein structure homology models
• • • Proteins & Proteomes
  • • Medicinal chemistry

  • • Software tool

  SwissDock

  Docking of small ligands into protein active sites
• • • Proteins & Proteomes

  • • Database

  ENZYME

  Enzyme nomenclature database
• • • Proteins & Proteomes

  • • Database
  • • Software tool

  HAMAP

  UniProtKB family classification and annotation
• • • Genes & Genomes
  • • Proteins & Proteomes
  • • Structural Biology

  • • Database

  ViralZone

  Factsheets about viruses linked to sequence databases
• • • Transcriptomics
  • • Evolution biology

  • • Database
  • • Software tool

  Bgee

  Gene expression expertise
• • • Proteins & Proteomes
  • • Systems Biology

  • • Database
  • • Software tool

  STRING

  Protein-protein interaction networks and enrichment analysis
• • • Evolution & Phylogeny

  • • Database

  OrthoDB

  Ortholog evolutionary and functional annotations
• • • Evolution & Phylogeny

  • • Database
  • • Software tool

  OMA

  Orthology inference among complete genomes
• • • Proteins & Proteomes
  • • Lipidomics

  • • Database

  SwissLipids

  Knowledge resource for lipids
• • • Proteins & Proteomes

  • • Database

  VenomZone

  Portal to venom protein UniProtKB entries
• • • Systems Biology

  • • Database

  Cellosaurus

  Knowledge resource on cell lines
• • • Genomics
  • • Population genetics

  • • Software tool

  V-pipe

  Viral genomics pipeline
• • • Proteins & Proteomes
  • • Glycomics

  • • Database

  UniLectin

  Structural and functional classification of lectins
• • • Proteins & Proteomes
  • • Structural analysis

  • • Software tool

  SwissTargetPrediction

  Target prediction for bioactive small molecules
• • • Medicinal chemistry

  • • Software tool

  SwissSimilarity

  Ligand-based virtual screening
• • • Proteins & Proteomes
  • • Structural analysis

  • • Database

  SwissSidechain

  Database of non-natural amino acid side chains
• • • Transcriptomics
  • • Systems Biology

  • • Database

  SwissRegulon

  Database of genome-wide annotations of regulatory sites
• • • Structural analysis

  • • Software tool

  SwissParam

  Topology and parameters for small molecules
• • • Proteins & Proteomes
  • • Structural analysis

  • • Database

  SwissBioIsostere

  Database of molecular replacements for ligand design
• • • Medicinal chemistry

  • • Software tool

  SwissADME

  Pharmacokinetics properties and druglikeness
• • • Genes & Genomes
  • • Evolution & Phylogeny

  • • Software tool

  REALPHY

  Inference of phylogenetic trees from genome data
• • • Proteins & Proteomes

  • • Database
  • • Software tool

  PaxDb

  Protein abundance across several organisms
• • • Structural analysis

  • • Software tool

  OpenStructure

  Molecular modelling and visualisation environment
• • • Genomics
  • • Evolution biology

  • • Software tool

  Nextstrain

  Impact of pathogen genome data on science and public health
• • • Genomics
  • • Systems Biology

  • • Database

  arrayMAP

  Curated array data repository for cancer genomics
• • • Proteins & Proteomes

  • • Software tool

  MSight

  Mass Spectrometry Imager
• • • Metagenomics
  • • Population genetics

  • • Database
  • • Software tool

  mOTUs

  Microbial taxonomic and population genomic profiler
• • • Genomics
  • • Systems Biology

  • • Database
  • • Software tool

  iPtgxDBs

  Platform for integrated proteogenomics databases
• • • Proteins & Proteomes

  • • Software tool

  MELANIE

  2-D PAGE analysis
• • • Proteins & Proteomes
  • • Glycomics

  • • Database

  GlyConnect

  Integrated data platform to study glycosylation
• • • Transcriptomics
  • • Evolution biology

  • • Software tool

  BUSCO

  From QC to gene prediction and phylogenomics
• • • Proteins & Proteomes

  • • Database

  UniProtKB/Swiss-Prot

  Protein knowledgebase
• • • Transcriptomics
  • • Proteins & Proteomes

  • • Software tool

  Translate

  Convert a nucleotide sequence to a protein sequence
• • • Proteins & Proteomes

  • • Software tool

  Sulfinator

  Predict tyrosine sulfation sites in protein sequences
• • • Proteins & Proteomes

  • • Software tool

  SIM

  Alignment of two protein sequences or within a sequence
• • • Proteins & Proteomes
  • • Metabolomics

  • • Database

  Rhea

  Expert-curated database of biochemical reactions
• • • Proteins & Proteomes

  • • Software tool

  RandSeq

  Random protein sequence generator
• • • Proteins & Proteomes

  • • Software tool

  ProtScale

  Profile produced by amino acids scales on protein sequences
• • • Proteins & Proteomes

  • • Software tool

  ProtParam

  Computation of physico chemical parameters of a protein
• • • Proteins & Proteomes

  • • Software tool

  PRATT

  Conserved patterns in a set of protein sequences
• • • Proteins & Proteomes

  • • Software tool

  PeptideMass

  Theoretical protein cleavage by a given enzyme
• • • Proteins & Proteomes

  • • Software tool

  PeptideCutter

  Potential cleavage sites in a protein
• • • Proteins & Proteomes
  • • Text mining & Machine learning

  • • Software tool

  Myristoylator

  N-terminal myristoylation of proteins by neural networks
• • • Proteins & Proteomes

  • • Software tool

  MALDIPepQuant

  Quantify MALDI peptides from Phenyx output
• • • Proteins & Proteomes

  • • Software tool

  HAMAP-Scan

  Scanning of protein sequences against HAMAP families
• • • Proteins & Proteomes

  • • Software tool

  FindPept

  Unspecific protein cleavage from experimental masses
• • • Proteins & Proteomes

  • • Software tool

  FindMod

  Potential PTMs and single amino acid substitutions
• • • Proteins & Proteomes

  • • Software tool

  Decrease redundancy

  Redundancy reduction in a set of sequences
• • • Transcriptomics
  • • Systems Biology

  • • Software tool

  CRUNCH

  Automated pipeline for ChIP-seq data analysis
• • • Proteins & Proteomes
  • • Structural analysis

  • • Software tool

  SWISS-MODEL Workspace

  Fully automated protein structure homology-modeling server
• • • Transcriptomics
  • • Systems Biology

  • • Software tool

  ISMARA

  Webservice for gene expression and epigenetic data analysis
• • • Genomics
  • • Systems Biology

  • • Software tool

  Phylogibbs

  Regulatory sites in a collection of DNA sequences
• • • Proteins & Proteomes

  • • Software tool

  ScanProsite

  Protein sequences against PROSITE
• • • Genes & Genomes
  • • Evolution & Phylogeny

  • • Database
  • • Software tool

  SwissOrthology

  One-stop shop for orthologs
• • • Medicinal chemistry

  • • Database
  • • Software tool

  SwissDrugDesign

  Widening access to computer-aided drug design
• • • Transcriptomics
  • • Evolution & Phylogeny
  • • Systems Biology

  • • Database
  • • Software tool

  SwissRegulon Portal

  Tools and data for regulatory genomics
• • • Proteins & Proteomes
  • • Structural Biology

  • • Database
  • • Software tool

  SWISS-MODEL

  Protein structure homology-modelling
• • • Genomics
  • • Population genetics

  • • Software tool

  V-pipe SARS-CoV-2

  V-pipe pipeline for SARS-CoV-2 sequencing data
• • • Genomics

  • • Database

  TASmania

  Toxin-antitoxin database
• • • Genomics

  • • Software tool

  TASer

  Search tool associated to TASmania
• • • Evolution & Phylogeny

  • • Database

  OMA SPARQL endpoint

  SPARQL access to the OMA Orthology database
• • • Transcriptomics
  • • Evolution biology

  • • Database

  Bgee SPARQL endpoint

  SPARQL access to the Bgee gene expression database
• • • Evolution & Phylogeny

  • • Database

  OrthoDB SPARQL endpoint

  SPARQL access to the OrthoDB catalog of orthologs
• • • Proteins & Proteomes

  • • Database

  HAMAP SPARQL endpoint

  SPARQL access to the HAMAP annotation rules
• • • Proteins & Proteomes

  • • Database

  UniProt SPARQL endpoint

  SPARQL access to UniProt and related data
• • • Transcriptomics

  • • Database
  • • Software tool

  ASAP

  Web-based, cooperative portal for single-cell data analyses
• • • Proteins & Proteomes
  • • Metabolomics

  • • Database

  Rhea SPARQL endpoint

  SPARQL access to the Rhea knowledgebase
• • • Genes & Genomes

  • • Database
  • • Software tool

  SPSP | Swiss Pathogen Surveillance Platform

  Public Swiss pathogen NGS data
• • • Text mining & Machine learning

  • • Database
  • • Software tool

  SIBiLS

  Personalized information retrieval from the literature
• • • Proteins & Proteomes
  • • Glycomics

  • • Database
  • • Software tool

  Glyco@Expasy

  Zooming in on web-based glycoinformatics resources
• • • Genomics
  • • Evolution & Phylogeny

  • • Software tool

  Nextclade

  Clade assignment, mutation calling & QC for virus sequences
• • • Proteins & Proteomes
  • • Lipidomics

  • • Database

  SwissLipids SPARQL endpoint

  SPARQL access to the SwissLipids knowledgebase
• • • Systems Biology

  • • Database

  SwissBioPics

  Subcellular location visualization
• • • Structural Biology

  • • Database

  ModelArchive

  Repository of predicted macromolecular structure models
• • • Proteins & Proteomes
  • • Structural Biology

  • • Database
  • • Software tool

  CAMEO

  Weekly automated benchmarking of protein structure modelling
• • • Transcriptomics

  • • Database

  Glittr

  Git repositories with bioinformatics training material
• • • Genes & Genomes
  • • Systems Biology

  • • Software tool

  CREMA

  Cis-Regulatory Element Motif Activities
• • • Transcriptomics
  • • Systems Biology

  • • Software tool

  DWT-online

  Dinucleotide Weight Tensor toolbox and visualisation service
• • • Genes & Genomes
  • • Evolution biology

  • • Software tool

  BEAST2

  Bayesian evolutionary analysis by sampling trees
• • • Proteins & Proteomes
  • • Systems Biology

  • • Database

  Protein Universe Atlas

  Interactive, annotated similarity network of all proteins
• • • Proteins & Proteomes
  • • Text mining & Machine learning

  • • Database

  EnzChemRED

  Enzyme Chemistry Relation Extraction Dataset
• • • Metagenomics

  • • Database
  • • Software tool

  Microbe Atlas

  Explore the microbiome of the world
• • • Transcriptomics
  • • Systems Biology

  • • Software tool

  Bonsai

  Analysis of single cell RNA-seq data
• • • Evolution biology
  • • Systems Biology

  • • Database

  MoultDB

  Integrative resource on moulting in arthropods
• • • Metagenomics

  • • Software tool

  MAGFlow/BIgMAG

  Metagenome metrics and taxonomical annotation visualization
• • • Proteins & Proteomes

  • • Software tool

  MyDomains

  Protein domains image creator
• • • Metagenomics

  • • Database

  BeeBiome

  Bee-associated microbes/viruses
• • • Proteins & Proteomes
  • • Evolution & Phylogeny

  • • Database
  • • Software tool

  Orthology Benchmarking

  Quest for Orthologs benchmarking service