Search results: database and tool description

52 resources found for Text

      • Proteins & Proteomes
      • Database

    UniProtKB

    Protein sequence database
      • Genomics
      • Evolution biology
      • Database

    Selectome

    Database of positive selection
      • Proteins & Proteomes
      • Database

    ENZYME

    Enzyme nomenclature database
      • Evolution & Phylogeny
      • Database

    OrthoDB

    Ortholog evolutionary and functional annotations
      • Evolution & Phylogeny
      • Database
      • Software tool

    OMA

    Orthology inference among complete genomes
      • Proteins & Proteomes
      • Metabolomics
      • Database
      • Software tool

    MetaNetX

    Metabolic network repository & analysis
      • Systems Biology
      • Database

    Cellosaurus

    Knowledge resource on cell lines
      • Genomics
      • Population genetics
      • Software tool

    V-pipe

    Viral genomics pipeline
      • Transcriptomics
      • Systems Biology
      • Database

    SwissRegulon

    Database of genome-wide annotations of regulatory sites
      • Genomics
      • Software tool

    SSA

    Analysis of nucleic acid sequence motifs
      • Genomics
      • Software tool

    ShoRAH

    Analysis of NGS data
      • Genes & Genomes
      • Evolution & Phylogeny
      • Software tool

    REALPHY

    Inference of phylogenetic trees from genome data
      • Transcriptomics
      • Software tool

    QuasR

    Quantification and analysis of Short Reads
      • Proteins & Proteomes
      • Software tool

    pftools

    Build, calibrate, and search biological sequences
      • Transcriptomics
      • Evolution biology
      • Software tool

    BUSCO

    From QC to gene prediction and phylogenomics
      • Proteins & Proteomes
      • Software tool

    Sulfinator

    Predict tyrosine sulfation sites in protein sequences
      • Proteins & Proteomes
      • Software tool

    RandSeq

    Random protein sequence generator
      • Proteins & Proteomes
      • Software tool

    PRATT

    Conserved patterns in a set of protein sequences
      • Proteins & Proteomes
      • Software tool

    HAMAP-Scan

    Scanning of protein sequences against HAMAP families
      • Proteins & Proteomes
      • Software tool

    UniProt BLAST

    BLAST sequence similarity search on the UniProt web site
      • Transcriptomics
      • Systems Biology
      • Software tool

    CRUNCH

    Automated pipeline for ChIP-seq data analysis
      • Proteins & Proteomes
      • Structural analysis
      • Software tool

    SWISS-MODEL Workspace

    Fully automated protein structure homology-modeling server
      • Transcriptomics
      • Systems Biology
      • Software tool

    ISMARA

    Webservice for gene expression and epigenetic data analysis
      • Genomics
      • Systems Biology
      • Software tool

    Phylogibbs

    Regulatory sites in a collection of DNA sequences
      • Proteins & Proteomes
      • Software tool

    ScanProsite

    Protein sequences against PROSITE
      • Genes & Genomes
      • Evolution & Phylogeny
      • Database
      • Software tool

    SwissOrthology

    One-stop shop for orthologs
      • Genomics
      • Population genetics
      • Software tool

    V-pipe SARS-CoV-2

    V-pipe pipeline for SARS-CoV-2 sequencing data
      • Genomics
      • Software tool

    TASer

    Search tool associated to TASmania
      • Evolution & Phylogeny
      • Software tool

    OrthoLoger

    Accurate and scalable inference of groups of orthologs
      • Text mining & Machine learning
      • Database
      • Software tool

    SIBiLS

    Personalized information retrieval from the literature
      • Evolution & Phylogeny
      • Software tool

    raxmlGUI

    raxmlGUI 2.0 is a graphical user interface to RAxML
      • Text mining & Machine learning
      • Software tool

    Variomes

    Search engine to support the curation of genomic variants
      • Metagenomics
      • Software tool

    mVIRs

    Prediction tool for inducible, bacteria-infecting viruses
      • Evolution & Phylogeny
      • Software tool

    Phylo.io

    A tool for visualising and comparing phylogenetic trees
      • Genomics
      • Evolution & Phylogeny
      • Software tool

    Nextclade

    Clade assignment, mutation calling & QC for virus sequences
      • Systems Biology
      • Database

    SwissBioPics

    Subcellular location visualization
      • Proteins & Proteomes
      • Text mining & Machine learning
      • Database

    MHC Motif Atlas

    MHC Motif Atlas
      • Genes & Genomes
      • Systems Biology
      • Software tool

    CREMA

    Cis-Regulatory Element Motif Activities
      • Genes & Genomes
      • Evolution biology
      • Software tool

    BEAST2

    Bayesian evolutionary analysis by sampling trees
      • Genomics
      • Evolution biology
      • Software tool

    GenSpectrum

    Real-time pathogen genomic sequence analysis
      • Proteins & Proteomes
      • Software tool

    OMArk

    OMArk determines the quality and completeness of gene sets
      • Text mining & Machine learning
      • Software tool

    BiotXplorer

    Biotic interactions from scientific publications
      • Text mining & Machine learning
      • Software tool

    Biodiversity PMC

    Search a large collection of scientific publications
      • Proteins & Proteomes
      • Database

    EnzChemRED

    Enzyme Chemistry Relation Extraction Dataset
      • Genomics
      • Database

    Pathoplexus

    Human viral pathogen genomic data sharing platform
      • Metagenomics
      • Database
      • Software tool

    Microbe Atlas

    Explore the microbiome of the world
      • Proteins & Proteomes
      • Evolution & Phylogeny
      • Software tool

    OMAmer

    Alignment-free protein subfamily assignment