59 resources found for Text

• • • Proteins & Proteomes

  • • Database

  UniProtKB

  Protein sequence database
• • • Genomics
  • • Evolution biology

  • • Database

  Selectome

  Database of positive selection
• • • Proteins & Proteomes

  • • Database

  ENZYME

  Enzyme nomenclature database
• • • Evolution & Phylogeny

  • • Database

  OrthoDB

  Ortholog evolutionary and functional annotations
• • • Evolution & Phylogeny

  • • Database
  • • Software tool

  OMA

  Orthology inference among complete genomes
• • • Proteins & Proteomes
  • • Metabolomics

  • • Database
  • • Software tool

  MetaNetX

  Metabolic network repository & analysis
• • • Systems Biology

  • • Database

  Cellosaurus

  Knowledge resource on cell lines
• • • Genomics
  • • Population genetics

  • • Software tool

  V-pipe

  Viral genomic variant detection pipeline
• • • Transcriptomics
  • • Systems Biology

  • • Database

  SwissRegulon

  Database of genome-wide annotations of regulatory sites
• • • Genomics

  • • Software tool

  SSA

  Analysis of nucleic acid sequence motifs
• • • Genomics

  • • Software tool

  ShoRAH

  Analysis of NGS data
• • • Genes & Genomes
  • • Evolution & Phylogeny

  • • Software tool

  REALPHY

  Inference of phylogenetic trees from genome data
• • • Transcriptomics

  • • Software tool

  QuasR

  Quantification and analysis of Short Reads
• • • Proteins & Proteomes

  • • Software tool

  pftools

  Build, calibrate, and search biological sequences
• • • Transcriptomics

  • • Software tool

  FetchGWI / tagger

  Short sequence mapping
• • • Transcriptomics
  • • Evolution biology

  • • Software tool

  BUSCO

  From QC to gene prediction and phylogenomics
• • • Proteins & Proteomes

  • • Database

  UniProtKB/Swiss-Prot

  Protein knowledgebase
• • • Proteins & Proteomes

  • • Software tool

  Sulfinator

  Predict tyrosine sulfation sites in protein sequences
• • • Proteins & Proteomes

  • • Software tool

  RandSeq

  Random protein sequence generator
• • • Proteins & Proteomes

  • • Software tool

  PRATT

  Conserved patterns in a set of protein sequences
• • • Proteins & Proteomes

  • • Software tool

  HAMAP-Scan

  Scanning of protein sequences against HAMAP families
• • • Proteins & Proteomes

  • • Software tool

  Decrease redundancy

  Redundancy reduction in a set of sequences
• • • Proteins & Proteomes

  • • Software tool

  UniProt ClustalO

  Align two or more protein sequences
• • • Proteins & Proteomes

  • • Software tool

  UniProt BLAST

  BLAST sequence similarity search on the UniProt web site
• • • Transcriptomics
  • • Systems Biology

  • • Software tool

  CRUNCH

  Automated pipeline for ChIP-seq data analysis
• • • Proteins & Proteomes
  • • Structural analysis

  • • Software tool

  SWISS-MODEL Workspace

  Fully automated protein structure homology-modeling server
• • • Transcriptomics
  • • Systems Biology

  • • Software tool

  ISMARA

  Webservice for gene expression and epigenetic data analysis
• • • Genomics
  • • Systems Biology

  • • Software tool

  Phylogibbs

  Regulatory sites in a collection of DNA sequences
• • • Proteins & Proteomes

  • • Software tool

  ScanProsite

  Protein sequences against PROSITE
• • • Genes & Genomes
  • • Evolution & Phylogeny

  • • Database
  • • Software tool

  SwissOrthology

  One-stop shop for orthologs
• • • Genomics
  • • Population genetics

  • • Software tool

  V-pipe SARS-CoV-2

  V-pipe pipeline for SARS-CoV-2 sequencing data
• • • Genomics

  • • Software tool

  TASer

  Search tool associated to TASmania
• • • Evolution & Phylogeny

  • • Software tool

  OrthoLoger

  Accurate and scalable inference of groups of orthologs
• • • AI and machine learning

  • • Database
  • • Software tool

  SIBiLS

  Personalized information retrieval from the literature
• • • Evolution & Phylogeny

  • • Software tool

  raxmlGUI

  raxmlGUI 2.0 is a graphical user interface to RAxML
• • • AI and machine learning

  • • Software tool

  Variomes

  Search engine to support the curation of genomic variants
• • • Metagenomics

  • • Software tool

  mVIRs

  Prediction tool for inducible, bacteria-infecting viruses
• • • Evolution & Phylogeny

  • • Software tool

  Phylo.io

  A tool for visualising and comparing phylogenetic trees
• • • Genomics
  • • Evolution & Phylogeny

  • • Software tool

  Nextclade

  Clade assignment and quality control for viral genomes
• • • Systems Biology

  • • Database

  SwissBioPics

  Subcellular location visualization
• • • Proteins & Proteomes
  • • AI and machine learning

  • • Database

  MHC Motif Atlas

  MHC Motif Atlas
• • • Evolution biology
  • • Systems Biology
  • • AI and machine learning

  • • Software tool

  CAPTAIN

  Decision-support tool for conservation area prioritization
• • • Genes & Genomes
  • • Systems Biology

  • • Software tool

  CREMA

  Cis-Regulatory Element Motif Activities
• • • Genes & Genomes
  • • Evolution biology

  • • Software tool

  BEAST2

  Statistical framework for pathogen genome evolution analysis
• • • Genomics
  • • Evolution biology

  • • Software tool

  GenSpectrum

  Real-time pathogen genomic sequence analysis
• • • Proteins & Proteomes

  • • Software tool

  OMArk

  OMArk determines the quality and completeness of gene sets
• • • AI and machine learning

  • • Database

  SIBiLS SPARQL endpoint

  SPARQL access to SIBiLS, the SIB Literature Services
• • • AI and machine learning

  • • Software tool

  BiotXplorer

  Biotic interactions from scientific publications
• • • AI and machine learning

  • • Software tool

  Biodiversity PMC

  Search a large collection of scientific publications
• • • Proteins & Proteomes
  • • AI and machine learning

  • • Database

  EnzChemRED

  Enzyme Chemistry Relation Extraction Dataset
• • • Genomics

  • • Database

  Pathoplexus

  Human viral pathogen genomic data sharing platform
• • • Metagenomics

  • • Database
  • • Software tool

  Microbe Atlas

  Explore the microbiome of the world
• • • Proteins & Proteomes
  • • Evolution & Phylogeny

  • • Software tool

  OMAmer

  Alignment-free protein subfamily assignment
• • • Proteins & Proteomes
  • • AI and machine learning

  • • Database
  • • Software tool

  MixTCRpred

  Predictor of TCR-epitope interactions
• • • Metagenomics

  • • Software tool

  MAGFlow/BIgMAG

  Metagenome metrics and taxonomical annotation visualization
• • • Genes & Genomes
  • • Proteins & Proteomes

  • • Software tool

  MetaGraph

  Petabase-scale sequence search
• • • Evolution & Phylogeny

  • • Software tool

  FastOMA

  Orthology inference at scale
• • • Genomics
  • • Evolution & Phylogeny

  • • Software tool

  RECOPHY

  Recombination pattern analysis based on phylogeny
• • • Proteins & Proteomes
  • • Evolution & Phylogeny

  • • Software tool

  TEA

  The Embedded Alphabet for proteins