Structural Biology

SWISS-MODEL Repository

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Protein structure homology models

ModelArchive

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Repository of predicted macromolecular structure models

SwissDock

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Docking of small ligands into protein active sites

System Biology

MetaNetX

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Metabolic network repository & analysis

Cellosaurus

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Knowledge resource on cell lines

Genes & Genomes

Bgee

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Gene expression expertise

Evolution & Phylogeny

OMA

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Orthology inference among complete genomes

OrthoDB

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Ortholog evolutionary and functional annotations

Selectome

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Database of positive selection

Proteins & Proteomes

PROSITE

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Protein family and domain database

STRING

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Protein-protein interaction networks and enrichment analysis

UniProtKB

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Protein sequence database

ViralZone

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Fact sheets about viruses linked to sequence databases

ENZYME

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Enzyme nomenclature database

HAMAP

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UniProtKB family classification and annotation

SwissLipids

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Knowledge resource for lipids

VenomZone

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Portal to venom protein UniProtKB entries

Protein Universe Atlas

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Interactive, annotated similarity network of all proteins
Search results: database and tool description

56 resources found for Sequence analysis

      • Proteins & Proteomes
      • Database

    UniProtKB

    Protein sequence database
      • Genomics
      • Evolution biology
      • Database

    Selectome

    Database of positive selection
      • Proteins & Proteomes
      • Database

    PROSITE

    Protein family and domain database
      • Proteins & Proteomes
      • Database
      • Software tool

    HAMAP

    UniProtKB family classification and annotation
      • Evolution & Phylogeny
      • Database

    OrthoDB

    Ortholog evolutionary and functional annotations
      • Evolution & Phylogeny
      • Database
      • Software tool

    OMA

    Orthology inference among complete genomes
      • Genomics
      • Population genetics
      • Software tool

    V-pipe

    Viral genomics pipeline
      • Population genetics
      • Software tool

    Arlequin

    An integrated software for population genetics data analysis
      • Transcriptomics
      • Software tool

    TagScan

    Genome-wide sequence tag scanner
      • Genomics
      • Software tool

    SSA

    Analysis of nucleic acid sequence motifs
      • Genomics
      • Software tool

    ShoRAH

    Analysis of NGS data
      • Transcriptomics
      • Software tool

    QuasR

    Quantification and analysis of Short Reads
      • Genes & Genomes
      • Systems Biology
      • Database

    Progenetix

    Genomic profiles of cancer samples with focus on CNV
      • Genomics
      • Systems Biology
      • Database

    arrayMAP

    Curated array data repository for cancer genomics
      • Metagenomics
      • Population genetics
      • Database
      • Software tool

    mOTUs

    Microbial taxonomic and population genomic profiler
      • Genomics
      • Software tool

    IScan

    Insertion sequence identification in whole genomes
      • Genes & Genomes
      • Evolution biology
      • Software tool

    GenomeHistory

    Gene duplicate identification
      • Transcriptomics
      • Evolution biology
      • Software tool

    BUSCO

    From QC to gene prediction and phylogenomics
      • Proteins & Proteomes
      • Software tool

    RandSeq

    Random protein sequence generator
      • Proteins & Proteomes
      • Software tool

    ProtScale

    Profile produced by amino acids scales on protein sequences
      • Proteins & Proteomes
      • Software tool

    ProtParam

    Computation of physico chemical parameters of a protein
      • Proteins & Proteomes
      • Software tool

    PRATT

    Conserved patterns in a set of protein sequences
      • Proteins & Proteomes
      • Software tool

    PeptideMass

    Theoretical protein cleavage by a given enzyme
      • Proteins & Proteomes
      • Software tool

    PeptideCutter

    Potential cleavage sites in a protein
      • Proteins & Proteomes
      • Software tool

    HAMAP-Scan

    Scanning of protein sequences against HAMAP families
      • Proteins & Proteomes
      • Software tool

    Compute pI/MW

    Isoelectric point and molecular weight from protein sequence
      • Proteins & Proteomes
      • Software tool

    UniProt BLAST

    BLAST sequence similarity search on the UniProt web site
      • Genomics
      • Database
      • Software tool

    ChIP-Seq

    ChIP-Seq data analysis tools
      • Proteins & Proteomes
      • Software tool

    Dotlet

    Regions of close similarity in 2 sequences
      • Systems Biology
      • Software tool

    CLASTR

    Cellosaurus STR similarity search tool
      • Transcriptomics
      • Systems Biology
      • Software tool

    ISMARA

    Webservice for gene expression and epigenetic data analysis
      • Genomics
      • Systems Biology
      • Software tool

    Phylogibbs

    Regulatory sites in a collection of DNA sequences
      • Proteins & Proteomes
      • Software tool

    ScanProsite

    Protein sequences against PROSITE
      • Genes & Genomes
      • Evolution & Phylogeny
      • Database
      • Software tool

    SwissOrthology

    One-stop shop for orthologs
      • Transcriptomics
      • Evolution & Phylogeny
      • Systems Biology
      • Database
      • Software tool

    SwissRegulon Portal

    Tools and data for regulatory genomics
      • Genomics
      • Population genetics
      • Software tool

    V-pipe SARS-CoV-2

    V-pipe pipeline for SARS-CoV-2 sequencing data
      • Metagenomics
      • Software tool

    LEMMI

    Continuous benchmarking of methods for metagenomics
      • Evolution & Phylogeny
      • Software tool

    OrthoLoger

    Accurate and scalable inference of groups of orthologs
      • Transcriptomics
      • Database
      • Software tool

    ASAP

    Web-based, cooperative portal for single-cell data analyses
      • Evolution & Phylogeny
      • Software tool

    raxmlGUI

    raxmlGUI 2.0 is a graphical user interface to RAxML
      • Metagenomics
      • Software tool

    mVIRs

    Prediction tool for inducible, bacteria-infecting viruses
      • Evolution & Phylogeny
      • Software tool

    Phylo.io

    A tool for visualising and comparing phylogenetic trees
      • Evolution & Phylogeny
      • Database

    Swiss-Trees

    A collection of gold standard gene phylogenies
      • Genomics
      • Evolution & Phylogeny
      • Software tool

    Nextclade

    Clade assignment, mutation calling & QC for virus sequences
      • Genes & Genomes
      • Systems Biology
      • Database

    cancercelllines.org

    Genomic variants in human cancer cell lines
      • Genomics
      • Evolution biology
      • Software tool

    GenSpectrum

    Real-time pathogen genomic sequence analysis
      • Proteins & Proteomes
      • Software tool

    OMArk

    OMArk determines the quality and completeness of gene sets
      • Genomics
      • Database

    Pathoplexus

    Human viral pathogen genomic data sharing platform
      • Metagenomics
      • Database
      • Software tool

    Microbe Atlas

    Explore the microbiome of the world