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Showing 13 records out of 13 total

Categories: glycomics - Software type(s): website - tool
DrawGlycan-SNFG uses IUPAC-condensed string inputs to generate glycan and glycopeptide drawings. Bond fragmentation in either glycans or glycopeptides as well as other glycan descriptors can be included.
Categories: glycomics - Software type(s): website - tool
Exoglycosidase cleavage of monosaccharides results in signature peak shifts, in both UPLC and MS1. Manual interpretation of exoglycosidase data is complex and time consuming. GlycanAnalyzer is a web application that pattern matches N-glycan peak shifts following exoglycosidase digestion and automates structure assignments. GlycanAnalyzer significantly improves assignment accuracy over other auto-assignment methods on tests with a monoclonal antibody.
Categories: glycomics - Software type(s): website - tool
Calculate the mass of an oligosaccharide structure.
Categories: proteomics, (protein sequences and identification, proteomics experiment, protein modifications), glycomics - Software type(s): website - tool
Predict possible oligosaccharide structures that occur on proteins from their experimentally determined masses. The program can be used for free or derivatized oligosaccharides and for glycopeptides.
Categories: proteomics, glycomics - Software type(s): website - database/tool
GlyConnect is a platform integrating several sources of information to characterise the molecular actors of glycosylation, mainly glycoproteins and N- and O-linked glycans. The purpose of GlyConnect is to bring out in a single resource the relationships between glycans, the proteins that carries them, the enzymes that synthesise or degrade them and the proteins that bind them. GlyConnect also integrates tools otherwise accessible individually in the glycomics collection of ExPASy.
Categories: glycomics - Software type(s): website - database
GlycoStore is a curated chromatographic, electrophoretic and mass-spectrometry composition database of N-, O-, glycosphingolipid (GSL) glycans and free oligosaccharides associated with a range of glycoproteins, glycolipids and biotherapeutics. The database is built on publicly available experimental data sets from GlycoBase (NIBRT, Ireland), Bioprocessing Technology Institute (BTI) A*STAR, Macquarie University and Ludger Ltd.
Categories: glycomics - Software type(s): website - tool
Glynsight is a web interface to upload, visualize and interactively compare glycan expression profiles. The tool can process N- or O-linked glycan expression data.
Categories: glycomics - Software type(s): website - tool
Built from a model of the de novo biosynthesis of O-linked glycans, O-Glycologue is a method for generating networks of reactions based on the activities of a set of 26 human glycosyltransferase and sulfotransferase enzymes. The effects of enzyme knock-outs on the network can be predicted, and also the enzymes required to produce a given O-glycan.
Categories: glycomics - Software type(s): website - database
SugarBind covers knowledge of glycan binding of human pathogen lectins and adhesins. Information is collected by experts from articles published in peer-reviewed scientific journals. The data were compiled through an exhaustive search of literature published over the past 30 years by glycobiologists, microbiologists, and medical histologists.
Categories: proteomics, glycomics - Software type(s): website - tool
Swiss Mass Abacus is a calculator of peptide and glycopeptide masses. It is purposefully kept as simple as a basic calculator executing arithmetic operations.
Categories: glycomics - Software type(s): website - database
UniCarbKB is a curated and annotated glycan database which curates information from the scientific literature on glycoprotein derived glycan structures. It includes data previously available from GlycoSuiteDB.
Categories: proteomics, glycomics - Software type(s): website - database
UniLectin is a platform integrating information regarding non-enzymatic carbohydrate-binding proteins usually referred to as lectins with the prospect of building and refining a structural and functional classification of these proteins. It includes the reference Lectin3D a database of 3D structures curated from the PDB.
Categories: proteomics, (protein sequences and identification, function analysis, similarity search/alignment) - Software type(s): website - database
The UniProt Knowledgebase (UniProtKB) is produced by the UniProt consortium and is the central hub for the collection of functional information on proteins with accurate, consistent and rich annotation. It consists of: UniProtKB/Swiss-Prot (manually-annotated records and curator-evaluated computational analysis) and UniProtKB/TrEMBL (computationally analyzed records awaiting manual annotation).