Structural Biology

SWISS-MODEL Repository

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Protein structure homology models

ModelArchive

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Repository of predicted macromolecular structure models

SwissDock

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Docking of small ligands into protein active sites

System Biology

MetaNetX

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Metabolic network repository & analysis

Cellosaurus

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Knowledge resource on cell lines

Genes & Genomes

Bgee

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Gene expression expertise

Evolution & Phylogeny

OMA

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Orthology inference among complete genomes

OrthoDB

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Ortholog evolutionary and functional annotations

Selectome

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Database of positive selection

Proteins & Proteomes

PROSITE

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Protein family and domain database

STRING

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Protein-protein interaction networks and enrichment analysis

UniProtKB

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Protein sequence database

ViralZone

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Factsheets about viruses linked to sequence databases

ENZYME

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Enzyme nomenclature database

HAMAP

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UniProtKB family classification and annotation

SwissLipids

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Knowledge resource for lipids

VenomZone

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Portal to venom protein UniProtKB entries

Protein Universe Atlas

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Interactive, annotated similarity network of all proteins
Search results: database and tool description

27 resources found for genomes

      • Genes & Genomes
      • Proteins & Proteomes
      • Structural Biology
      • Database

    ViralZone

    Factsheets about viruses linked to sequence databases
      • Evolution & Phylogeny
      • Database
      • Software tool

    OMA

    Orthology inference among complete genomes
      • Transcriptomics
      • Software tool

    TagScan

    Genome-wide sequence tag scanner
      • Genomics
      • Database
      • Software tool

    SNP2TFBS

    Regulatory SNPs affecting TF binding site affinity
      • Genes & Genomes
      • Evolution & Phylogeny
      • Software tool

    REALPHY

    Inference of phylogenetic trees from genome data
      • Genes & Genomes
      • Systems Biology
      • Database

    Progenetix

    Genomic profiles of cancer samples with focus on CNV
      • Genomics
      • Software tool

    MADAP

    Clustering tool of genomic sites
      • Genomics
      • Software tool

    IScan

    Insertion sequence identification in whole genomes
      • Genomics
      • Systems Biology
      • Database
      • Software tool

    iPtgxDBs

    Platform for integrated proteogenomics databases
      • Genes & Genomes
      • Evolution biology
      • Software tool

    GenomeHistory

    Gene duplicate identification
      • Genes & Genomes
      • Evolution & Phylogeny
      • Database
      • Software tool

    SwissOrthology

    One-stop shop for orthologs
      • Transcriptomics
      • Evolution & Phylogeny
      • Systems Biology
      • Database
      • Software tool

    SwissRegulon Portal

    Tools and data for regulatory genomics
      • Genomics
      • Database

    TASmania

    Toxin-antitoxin database
      • Evolution & Phylogeny
      • Software tool

    OrthoLoger

    Accurate and scalable inference of groups of orthologs
      • Metagenomics
      • Software tool

    mVIRs

    Prediction tool for inducible, bacteria-infecting viruses
      • Genomics
      • Evolution & Phylogeny
      • Software tool

    Nextclade

    Clade assignment, mutation calling & QC for virus sequences
      • Genes & Genomes
      • Systems Biology
      • Database

    cancercelllines.org

    Genomic variants in human cancer cell lines
      • Genes & Genomes
      • Systems Biology
      • Software tool

    CREMA

    Cis-Regulatory Element Motif Activities
      • Genes & Genomes
      • Evolution biology
      • Software tool

    BEAST2

    Bayesian evolutionary analysis by sampling trees
      • Metagenomics
      • Database
      • Software tool

    Microbe Atlas

    Explore the microbiome of the world
      • Proteins & Proteomes
      • Evolution & Phylogeny
      • Software tool

    OMAmer

    Alignment-free protein subfamily assignment
      • Metagenomics
      • Software tool

    MAGFlow/BIgMAG

    Metagenome metrics and taxonomical annotation visualization
      • Transcriptomics
      • Proteins & Proteomes
      • Systems Biology
      • Software tool

    NOODAI

    Multi-omics data analysis and integration
      • Genes & Genomes
      • Proteins & Proteomes
      • Software tool

    MetaGraph

    Petabase-scale sequence search