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- Transcriptomics
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- Evolution biology
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- Database
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- Software tool
Bgee
Gene expression expertise
Structural Biology
Protein structure homology models
Repository of predicted macromolecular structure models
Docking of small ligands into protein active sites
System Biology
Metabolic network repository & analysis
Knowledge resource on cell lines
Genes & Genomes
Gene expression expertise
Evolution & Phylogeny
Orthology inference among complete genomes
Ortholog evolutionary and functional annotations
Database of positive selection
Proteins & Proteomes
Protein family and domain database
Protein-protein interaction networks and enrichment analysis
Protein sequence database
Factsheets about viruses linked to sequence databases
Enzyme nomenclature database
Search results: database and tool description
23 resources found for Sequencing
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- Genomics
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- Population genetics
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- Software tool
V-pipe
Viral genomics pipeline -
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- Genomics
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- Software tool
ShoRAH
Analysis of NGS data -
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- Genes & Genomes
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- Evolution & Phylogeny
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- Software tool
REALPHY
Inference of phylogenetic trees from genome data -
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- Transcriptomics
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- Software tool
QuasR
Quantification and analysis of Short Reads -
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- Genomics
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- Software tool
MADAP
Clustering tool of genomic sites -
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- Genomics
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- Systems Biology
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- Database
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- Software tool
iPtgxDBs
Platform for integrated proteogenomics databases -
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- Transcriptomics
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- Evolution biology
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- Software tool
BUSCO
From QC to gene prediction and phylogenomics -
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- Genomics
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- Database
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- Software tool
ChIP-Seq
ChIP-Seq data analysis tools -
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- Transcriptomics
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- Systems Biology
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- Software tool
CRUNCH
Automated pipeline for ChIP-seq data analysis -
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- Transcriptomics
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- Systems Biology
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- Software tool
ISMARA
Webservice for gene expression and epigenetic data analysis -
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- Genomics
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- Population genetics
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- Software tool
V-pipe SARS-CoV-2
V-pipe pipeline for SARS-CoV-2 sequencing data -
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- Transcriptomics
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- Evolution biology
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- Database
Bgee SPARQL endpoint
SPARQL access to the Bgee gene expression database -
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- Metagenomics
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- Software tool
mVIRs
Prediction tool for inducible, bacteria-infecting viruses -
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- Genomics
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- Evolution & Phylogeny
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- Software tool
Nextclade
Clade assignment, mutation calling & QC for virus sequences -
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- Genes & Genomes
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- Systems Biology
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- Software tool
CREMA
Cis-Regulatory Element Motif Activities -
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- Genomics
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- Evolution biology
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- Software tool
GenSpectrum
Real-time pathogen genomic sequence analysis -
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- Genomics
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- Database
Pathoplexus
Human viral pathogen genomic data sharing platform -
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- Transcriptomics
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- Systems Biology
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- Software tool
Cellstates
Infering clusters of cells in scRNA-seq data -
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- Transcriptomics
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- Systems Biology
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- Software tool
Sanity
Single-cell RNA-Seq normalization method -
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- Transcriptomics
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- Systems Biology
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- Software tool
Bonsai
Analysis of single cell RNA-seq data -
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- Metagenomics
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- Software tool
MAGFlow/BIgMAG
Metagenome metrics and taxonomical annotation visualization -
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- Genomics
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- Software tool
Loculus
Powering microbial genome databases -