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- Genomics
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- Evolution biology
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- Database
Selectome
Database of positive selection
Structural Biology
Protein structure homology models
Repository of predicted macromolecular structure models
Docking of small ligands into protein active sites
System Biology
Metabolic network repository & analysis
Knowledge resource on cell lines
Genes & Genomes
Gene expression expertise
Evolution & Phylogeny
Orthology inference among complete genomes
Ortholog evolutionary and functional annotations
Database of positive selection
Proteins & Proteomes
Protein family and domain database
Protein-protein interaction networks and enrichment analysis
Protein sequence database
Knowledgebase on virus biology and viral proteins
Enzyme nomenclature database
Search results: database and tool description
22 resources found for Phylogenetic species tree construction
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- Evolution & Phylogeny
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- Database
OrthoDB
Ortholog evolutionary and functional annotations -
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- Evolution & Phylogeny
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- Database
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- Software tool
OMA
Orthology inference among complete genomes -
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- Genes & Genomes
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- Evolution & Phylogeny
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- Software tool
REALPHY
Inference of phylogenetic trees from genome data -
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- Genomics
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- Evolution biology
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- Software tool
Nextstrain
Real-time tracking of pathogen evolution -
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- Metagenomics
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- Population genetics
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- Database
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- Software tool
mOTUs
Microbial taxonomic and population genomic profiler -
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- Genes & Genomes
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- Evolution biology
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- Software tool
GenomeHistory
Gene duplicate identification -
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- Transcriptomics
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- Evolution biology
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- Software tool
BUSCO
From QC to gene prediction and phylogenomics -
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- Genomics
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- Systems Biology
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- Software tool
Phylogibbs
Regulatory sites in a collection of DNA sequences -
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- Genes & Genomes
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- Evolution & Phylogeny
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- Database
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- Software tool
SwissOrthology
One-stop shop for orthologs -
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- Transcriptomics
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- Evolution & Phylogeny
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- Systems Biology
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- Database
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- Software tool
SwissRegulon Portal
Tools and data for regulatory genomics -
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- Evolution & Phylogeny
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- Database
OMA SPARQL endpoint
SPARQL access to the OMA Orthology database -
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- Evolution & Phylogeny
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- Database
OrthoDB SPARQL endpoint
SPARQL access to the OrthoDB catalog of orthologs -
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- Evolution & Phylogeny
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- Software tool
OrthoLoger
Accurate and scalable inference of groups of orthologs -
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- Evolution & Phylogeny
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- Software tool
raxmlGUI
raxmlGUI 2.0 is a graphical user interface to RAxML -
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- Evolution & Phylogeny
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- Software tool
Phylo.io
A tool for visualising and comparing phylogenetic trees -
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- Evolution & Phylogeny
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- Database
SwissTree
A collection of gold standard gene phylogenies -
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- Genes & Genomes
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- Evolution biology
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- Software tool
BEAST2
Statistical framework for pathogen genome evolution analysis -
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- Proteins & Proteomes
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- Evolution & Phylogeny
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- Software tool
OMAmer
Alignment-free protein subfamily assignment -
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- Proteins & Proteomes
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- Evolution & Phylogeny
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- Database
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- Software tool
Orthology Benchmarking
Quest for Orthologs benchmarking service -
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- Evolution & Phylogeny
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- Structural Biology
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- Software tool
Foldtree
Phylogenetic tree from predicted protein structures -
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- Evolution & Phylogeny
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- Software tool
FastOMA
Orthology inference at scale -