62 resources found for database

• • • Proteins & Proteomes

  • • Database

  UniProtKB

  Protein sequence database
• • • Genomics
  • • Evolution biology

  • • Database

  Selectome

  Database of positive selection
• • • Proteins & Proteomes

  • • Database

  PROSITE

  Protein family and domain database
• • • Proteins & Proteomes
  • • Structural Biology

  • • Database

  SWISS-MODEL Repository

  Protein structure homology models
• • • Proteins & Proteomes

  • • Database

  ENZYME

  Enzyme nomenclature database
• • • Proteins & Proteomes

  • • Database
  • • Software tool

  HAMAP

  UniProtKB family classification and annotation
• • • Evolution & Phylogeny

  • • Database

  OrthoDB

  Ortholog evolutionary and functional annotations
• • • Evolution & Phylogeny

  • • Database
  • • Software tool

  OMA

  Orthology inference among complete genomes
• • • Proteins & Proteomes

  • • Database

  VenomZone

  Portal to venom protein UniProtKB entries
• • • Proteins & Proteomes
  • • Glycomics

  • • Database

  UniLectin

  Structural and functional classification of lectins
• • • Genomics

  • • Database
  • • Software tool

  EPD

  Eukaryotic Promoter Database
• • • Proteins & Proteomes
  • • Structural analysis

  • • Software tool

  SwissTargetPrediction

  Target prediction for bioactive small molecules
• • • Medicinal chemistry

  • • Software tool

  SwissSimilarity

  Ligand-based virtual screening
• • • Proteins & Proteomes
  • • Structural analysis

  • • Database

  SwissSidechain

  Database of non-natural amino acid side chains
• • • Transcriptomics

  • • Software tool

  TagScan

  Genome-wide sequence tag scanner
• • • Transcriptomics
  • • Systems Biology

  • • Database

  SwissRegulon

  Database of genome-wide annotations of regulatory sites
• • • Proteins & Proteomes
  • • Structural analysis

  • • Database

  SwissBioIsostere

  Database of molecular replacements for ligand design
• • • Proteins & Proteomes
  • • Glycomics

  • • Database

  SugarBind

  Pathogen Sugar-Binding Database
• • • Transcriptomics

  • • Software tool

  SIBsim4

  Align expressed RNA sequences on a DNA template
• • • Genes & Genomes
  • • Systems Biology

  • • Database

  Progenetix

  Genomic profiles of cancer samples with focus on CNV
• • • Proteins & Proteomes

  • • Software tool

  pftools

  Build, calibrate, and search biological sequences
• • • Proteins & Proteomes

  • • Database
  • • Software tool

  PaxDb

  Protein abundance across several organisms
• • • Structural analysis

  • • Software tool

  OpenStructure

  Molecular modelling and visualisation environment
• • • Genomics
  • • Systems Biology

  • • Database

  arrayMAP

  Curated array data repository for cancer genomics
• • • Genomics
  • • Systems Biology

  • • Database
  • • Software tool

  iPtgxDBs

  Platform for integrated proteogenomics databases
• • • Transcriptomics

  • • Software tool

  FetchGWI / tagger

  Short sequence mapping
• • • Proteins & Proteomes
  • • Metabolomics

  • • Database

  Rhea

  Expert-curated database of biochemical reactions
• • • Proteins & Proteomes

  • • Database

  ABCD

  Database of chemically defined antibodies
• • • Proteins & Proteomes

  • • Software tool

  PeptideMass

  Theoretical protein cleavage by a given enzyme
• • • Proteins & Proteomes

  • • Software tool

  UniProt BLAST

  BLAST sequence similarity search on the UniProt web site
• • • Proteins & Proteomes
  • • Structural analysis

  • • Database

  Click2Drug

  Directory of computational drug design tools
• • • Proteins & Proteomes

  • • Software tool

  Dotlet

  Regions of close similarity in 2 sequences
• • • Systems Biology

  • • Software tool

  CLASTR

  Cellosaurus STR similarity search tool
• • • Proteins & Proteomes
  • • Systems Biology

  • • Database

  TCS

  Predict interaction specificity in bacterial signalling
• • • Proteins & Proteomes

  • • Software tool

  ScanProsite

  Protein sequences against PROSITE
• • • Genes & Genomes
  • • Evolution & Phylogeny

  • • Database
  • • Software tool

  SwissOrthology

  One-stop shop for orthologs
• • • Medicinal chemistry

  • • Database
  • • Software tool

  SwissDrugDesign

  Widening access to computer-aided drug design
• • • Proteins & Proteomes
  • • Structural Biology

  • • Database
  • • Software tool

  SWISS-MODEL

  Protein structure homology-modelling
• • • Genomics

  • • Database

  TASmania

  Toxin-antitoxin database
• • • Genomics

  • • Software tool

  TASer

  Search tool associated to TASmania
• • • Evolution & Phylogeny

  • • Database

  OMA SPARQL endpoint

  SPARQL access to the OMA Orthology database
• • • Transcriptomics
  • • Evolution biology

  • • Database

  Bgee SPARQL endpoint

  SPARQL access to the Bgee gene expression database
• • • Proteins & Proteomes

  • • Software tool

  rawrr

  R package for fast reading Thermo Fisher Scientific MS data
• • • Transcriptomics

  • • Database

  PolyAsite

  Database of curated RNA polyadenylation sites
• • • Proteins & Proteomes
  • • Metabolomics

  • • Database

  Rhea SPARQL endpoint

  SPARQL access to the Rhea knowledgebase
• • • Text mining & Machine learning

  • • Database
  • • Software tool

  SIBiLS

  Personalized information retrieval from the literature
• • • Proteins & Proteomes
  • • Glycomics

  • • Database

  GAG-DB

  3D structures of glycosaminoglycans
• • • Glycomics

  • • Software tool

  GlyConnect Compozitor

  Contextualises glycan composition sets
• • • Proteins & Proteomes
  • • Glycomics

  • • Database
  • • Software tool

  Glyco@Expasy

  Zooming in on web-based glycoinformatics resources
• • • Text mining & Machine learning

  • • Software tool

  Variomes

  Search engine to support the curation of genomic variants
• • • Evolution & Phylogeny

  • • Database

  SwissTree

  A collection of gold standard gene phylogenies
• • • Structural Biology

  • • Database

  ModelArchive

  Repository of predicted macromolecular structure models
• • • Systems Biology

  • • Database

  Cellosaurus SPARQL endpoint

  SPARQL access to Cellosaurus
• • • Text mining & Machine learning

  • • Database

  SIBiLS SPARQL endpoint

  SPARQL access to SIBiLS, the SIB Literature Services
• • • Text mining & Machine learning

  • • Software tool

  BiotXplorer

  Biotic interactions from scientific publications
• • • Text mining & Machine learning

  • • Software tool

  Biodiversity PMC

  Search a large collection of scientific publications
• • • Glycomics

  • • Software tool

  GlycoQL

  Match a glycan substructure to a database of full structures
• • • Genomics

  • • Database

  Pathoplexus

  Human viral pathogen genomic data sharing platform
• • • Proteins & Proteomes
  • • Glycomics

  • • Database

  MatrixDB

  Extracellular proteins and polysaccharides interactions
• • • Evolution biology
  • • Systems Biology

  • • Database

  MoultDB

  Integrative resource on moulting in arthropods
• • • Genomics

  • • Software tool

  Loculus

  Powering microbial genome databases
• • • Genes & Genomes
  • • Proteins & Proteomes

  • • Software tool

  MetaGraph

  Petabase-scale sequence search