e.g. BLAST, UniProt, MSH6, Albumin...

Structural Biology

SWISS-MODEL Repository

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Protein structure homology models

ModelArchive

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Repository of predicted macromolecular structure models

SwissDock

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Docking of small ligands into protein active sites

System Biology

MetaNetX

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Metabolic network repository & analysis

Cellosaurus

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Knowledge resource on cell lines

Genes & Genomes

Bgee

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Gene expression expertise

Evolution & Phylogeny

OMA

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Orthology inference among complete genomes

OrthoDB

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Ortholog evolutionary and functional annotations

Selectome

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Database of positive selection

Proteins & Proteomes

PROSITE

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Protein family and domain database

STRING

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Protein-protein interaction networks and enrichment analysis

UniProtKB

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Protein sequence database

ViralZone

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Fact sheets about viruses linked to sequence databases

ENZYME

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Enzyme nomenclature database

HAMAP

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UniProtKB family classification and annotation

SwissLipids

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Knowledge resource for lipids

VenomZone

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Portal to venom protein UniProtKB entries

Protein Universe Atlas

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Interactive, annotated similarity network of all proteins
Search results: database and tool description

23 resources found for Transcriptomics

      • Transcriptomics
      • Evolution biology
      • Database
      • Software tool

    Bgee
    Gene expression expertise
      • Transcriptomics
      • Software tool

    TagScan
    Genome-wide sequence tag scanner
      • Transcriptomics
      • Systems Biology
      • Database

    SwissRegulon
    Database of genome-wide annotations of regulatory sites
      • Transcriptomics
      • Software tool

    SIBsim4
    Align expressed RNA sequences on a DNA template
      • Transcriptomics
      • Software tool

    QuasR
    Quantification and analysis of Short Reads
      • Metagenomics
      • Population genetics
      • Database
      • Software tool

    mOTUs
    Microbial taxonomic and population genomic profiler
      • Transcriptomics
      • Software tool

    miRmap
    Prediction of microRNA target repression strength
      • Transcriptomics
      • Evolution biology
      • Software tool

    BUSCO
    From QC to gene prediction and phylogenomics
      • Transcriptomics
      • Proteins & Proteomes
      • Software tool

    Translate
    Convert a nucleotide sequence to a protein sequence
      • Transcriptomics
      • Systems Biology
      • Software tool

    CRUNCH
    Automated pipeline for ChIP-seq data analysis
      • Transcriptomics
      • Systems Biology
      • Software tool

    ISA
    Finding modules in gene expression data
      • Transcriptomics
      • Systems Biology
      • Software tool

    ExpressionView
    Biclusters identified in gene expression data
      • Transcriptomics
      • Systems Biology
      • Software tool

    ISMARA
    Webservice for gene expression and epigenetic data analysis
      • Transcriptomics
      • Evolution & Phylogeny
      • Systems Biology
      • Database
      • Software tool

    SwissRegulon Portal
    Tools and data for regulatory genomics
      • Transcriptomics
      • Evolution biology
      • Database

    Bgee SPARQL endpoint
    SPARQL access to the Bgee gene expression database
      • Transcriptomics
      • Database
      • Software tool

    ASAP
    Web-based, cooperative portal for single-cell data analyses
      • Transcriptomics
      • Database

    PolyAsite
    Database of curated RNA polyadenylation sites
      • Transcriptomics
      • Database

    Glittr
    Git repositories with bioinformatics training material
      • Transcriptomics
      • Systems Biology
      • Software tool

    DWT-online
    Dinucleotide Weight Tensor toolbox and visualisation service
      • Transcriptomics
      • Systems Biology
      • Software tool

    Cellstates
    Infering clusters of cells in scRNA-seq data
      • Transcriptomics
      • Systems Biology
      • Software tool

    Sanity
    Single-cell RNA-Seq normalization method
      • Transcriptomics
      • Systems Biology
      • Software tool

    Bonsai
    Analysis of scRNA-seq data