Structural Biology

SWISS-MODEL Repository

Error while retrieving the hits
Protein structure homology models

ModelArchive

Error while retrieving the hits
Repository of predicted macromolecular structure models

SwissDock

Error while retrieving the hits
Docking of small ligands into protein active sites

System Biology

MetaNetX

Error while retrieving the hits
Metabolic network repository & analysis

Cellosaurus

Error while retrieving the hits
Knowledge resource on cell lines

Genes & Genomes

Bgee

Error while retrieving the hits
Gene expression expertise

Evolution & Phylogeny

OMA

Error while retrieving the hits
Orthology inference among complete genomes

OrthoDB

Error while retrieving the hits
Ortholog evolutionary and functional annotations

Selectome

Error while retrieving the hits
Database of positive selection

Proteins & Proteomes

PROSITE

Error while retrieving the hits
Protein family and domain database

STRING

Error while retrieving the hits
Protein-protein interaction networks and enrichment analysis

UniProtKB

Error while retrieving the hits
Protein sequence database

ViralZone

Error while retrieving the hits
Fact sheets about viruses linked to sequence databases

ENZYME

Error while retrieving the hits
Enzyme nomenclature database

HAMAP

Error while retrieving the hits
UniProtKB family classification and annotation

SwissLipids

Error while retrieving the hits
Knowledge resource for lipids

VenomZone

Error while retrieving the hits
Portal to venom protein UniProtKB entries

Protein Universe Atlas

Error while retrieving the hits
Interactive, annotated similarity network of all proteins
Search results: database and tool description

23 resources found for Transcriptomics

      • Transcriptomics
      • Evolution biology
      • Database
      • Software tool

    Bgee

    Gene expression expertise
      • Transcriptomics
      • Software tool

    TagScan

    Genome-wide sequence tag scanner
      • Transcriptomics
      • Systems Biology
      • Database

    SwissRegulon

    Database of genome-wide annotations of regulatory sites
      • Transcriptomics
      • Software tool

    SIBsim4

    Align expressed RNA sequences on a DNA template
      • Transcriptomics
      • Software tool

    QuasR

    Quantification and analysis of Short Reads
      • Metagenomics
      • Population genetics
      • Database
      • Software tool

    mOTUs

    Microbial taxonomic and population genomic profiler
      • Transcriptomics
      • Software tool

    miRmap

    Prediction of microRNA target repression strength
      • Transcriptomics
      • Evolution biology
      • Software tool

    BUSCO

    From QC to gene prediction and phylogenomics
      • Transcriptomics
      • Proteins & Proteomes
      • Software tool

    Translate

    Convert a nucleotide sequence to a protein sequence
      • Transcriptomics
      • Systems Biology
      • Software tool

    CRUNCH

    Automated pipeline for ChIP-seq data analysis
      • Transcriptomics
      • Systems Biology
      • Software tool

    ISA

    Finding modules in gene expression data
      • Transcriptomics
      • Systems Biology
      • Software tool

    ExpressionView

    Biclusters identified in gene expression data
      • Transcriptomics
      • Systems Biology
      • Software tool

    ISMARA

    Webservice for gene expression and epigenetic data analysis
      • Transcriptomics
      • Evolution & Phylogeny
      • Systems Biology
      • Database
      • Software tool

    SwissRegulon Portal

    Tools and data for regulatory genomics
      • Transcriptomics
      • Evolution biology
      • Database

    Bgee SPARQL endpoint

    SPARQL access to the Bgee gene expression database
      • Transcriptomics
      • Database
      • Software tool

    ASAP

    Web-based, cooperative portal for single-cell data analyses
      • Transcriptomics
      • Database

    PolyAsite

    Database of curated RNA polyadenylation sites
      • Transcriptomics
      • Database

    Glittr

    Git repositories with bioinformatics training material
      • Transcriptomics
      • Systems Biology
      • Software tool

    DWT-online

    Dinucleotide Weight Tensor toolbox and visualisation service
      • Transcriptomics
      • Systems Biology
      • Software tool

    Cellstates

    Infering clusters of cells in scRNA-seq data
      • Transcriptomics
      • Systems Biology
      • Software tool

    Sanity

    Single-cell RNA-Seq normalization method
      • Transcriptomics
      • Systems Biology
      • Software tool

    Bonsai

    Analysis of scRNA-seq data