Structural Biology

SWISS-MODEL Repository

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Protein structure homology models

ModelArchive

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Repository of predicted macromolecular structure models

SwissDock

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Docking of small ligands into protein active sites

System Biology

MetaNetX

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Metabolic network repository & analysis

Cellosaurus

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Knowledge resource on cell lines

Genes & Genomes

Bgee

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Gene expression expertise

Evolution & Phylogeny

OMA

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Orthology inference among complete genomes

OrthoDB

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Ortholog evolutionary and functional annotations

Selectome

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Database of positive selection

Proteins & Proteomes

PROSITE

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Protein family and domain database

STRING

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Protein-protein interaction networks and enrichment analysis

UniProtKB

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Protein sequence database

ViralZone

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Factsheets about viruses linked to sequence databases

ENZYME

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Enzyme nomenclature database

HAMAP

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UniProtKB family classification and annotation

SwissLipids

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Knowledge resource for lipids

VenomZone

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Portal to venom protein UniProtKB entries

Protein Universe Atlas

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Interactive, annotated similarity network of all proteins
Search results: database and tool description

45 resources found for Prediction%20and%20recognition

      • Proteins & Proteomes
      • Database

    UniProtKB

    Protein sequence database
      • Proteins & Proteomes
      • Medicinal chemistry
      • Software tool

    SwissDock

    Docking of small ligands into protein active sites
      • Evolution & Phylogeny
      • Database
      • Software tool

    OMA

    Orthology inference among complete genomes
      • Proteins & Proteomes
      • Database

    VenomZone

    Portal to venom protein UniProtKB entries
      • Proteins & Proteomes
      • Structural analysis
      • Software tool

    SwissTargetPrediction

    Target prediction for bioactive small molecules
      • Proteins & Proteomes
      • Structural analysis
      • Database

    SwissSidechain

    Database of non-natural amino acid side chains
      • Structural analysis
      • Software tool

    SwissParam

    Topology and parameters for small molecules
      • Medicinal chemistry
      • Software tool

    SwissADME

    Pharmacokinetics properties and druglikeness
      • Genomics
      • Software tool

    SSA

    Analysis of nucleic acid sequence motifs
      • Genomics
      • Database
      • Software tool

    SNP2TFBS

    Regulatory SNPs affecting TF binding site affinity
      • Transcriptomics
      • Software tool

    SIBsim4

    Align expressed RNA sequences on a DNA template
      • Proteins & Proteomes
      • Structural analysis
      • Software tool

    QMEAN

    Protein model quality estimation
      • Transcriptomics
      • Software tool

    miRmap

    Prediction of microRNA target repression strength
      • Genomics
      • Systems Biology
      • Database
      • Software tool

    iPtgxDBs

    Platform for integrated proteogenomics databases
      • Transcriptomics
      • Evolution biology
      • Software tool

    BUSCO

    From QC to gene prediction and phylogenomics
      • Proteins & Proteomes
      • Software tool

    Sulfinator

    Predict tyrosine sulfation sites in protein sequences
      • Proteins & Proteomes
      • Software tool

    PeptideMass

    Theoretical protein cleavage by a given enzyme
      • Proteins & Proteomes
      • Software tool

    PeptideCutter

    Potential cleavage sites in a protein
      • Proteins & Proteomes
      • Text mining & Machine learning
      • Software tool

    Myristoylator

    N-terminal myristoylation of proteins by neural networks
      • Proteins & Proteomes
      • Software tool

    HAMAP-Scan

    Scanning of protein sequences against HAMAP families
      • Proteins & Proteomes
      • Glycomics
      • Software tool

    GlycoMod

    Possible oligosaccharide structures on proteins from masses
      • Proteins & Proteomes
      • Software tool

    FindMod

    Potential PTMs and single amino acid substitutions
      • Genomics
      • Database
      • Software tool

    ChIP-Seq

    ChIP-Seq data analysis tools
      • Proteins & Proteomes
      • Structural analysis
      • Database

    Click2Drug

    Directory of computational drug design tools
      • Transcriptomics
      • Systems Biology
      • Software tool

    CRUNCH

    Automated pipeline for ChIP-seq data analysis
      • Proteins & Proteomes
      • Structural analysis
      • Software tool

    SWISS-MODEL Workspace

    Fully automated protein structure homology-modeling server
      • Proteins & Proteomes
      • Systems Biology
      • Database

    TCS

    Predict interaction specificity in bacterial signalling
      • Transcriptomics
      • Systems Biology
      • Software tool

    ISMARA

    Webservice for gene expression and epigenetic data analysis
      • Proteins & Proteomes
      • Software tool

    ScanProsite

    Protein sequences against PROSITE
      • Medicinal chemistry
      • Database
      • Software tool

    SwissDrugDesign

    Widening access to computer-aided drug design
      • Transcriptomics
      • Evolution & Phylogeny
      • Systems Biology
      • Database
      • Software tool

    SwissRegulon Portal

    Tools and data for regulatory genomics
      • Proteins & Proteomes
      • Structural Biology
      • Database
      • Software tool

    SWISS-MODEL

    Protein structure homology-modelling
      • Evolution & Phylogeny
      • Software tool

    OrthoLoger

    Accurate and scalable inference of groups of orthologs
      • Proteins & Proteomes
      • Software tool

    rawrr

    R package for fast reading Thermo Fisher Scientific MS data
      • Metagenomics
      • Software tool

    mVIRs

    Prediction tool for inducible, bacteria-infecting viruses
      • Systems Biology
      • Software tool

    OMAMO

    OMAMO allows the user to find the best simple model organism
      • Structural Biology
      • Database

    ModelArchive

    Repository of predicted macromolecular structure models
      • Proteins & Proteomes
      • Structural Biology
      • Database
      • Software tool

    CAMEO

    Weekly automated benchmarking of protein structure modelling
      • Genes & Genomes
      • Systems Biology
      • Software tool

    CREMA

    Cis-Regulatory Element Motif Activities
      • Transcriptomics
      • Systems Biology
      • Software tool

    DWT-online

    Dinucleotide Weight Tensor toolbox and visualisation service
      • Proteins & Proteomes
      • Systems Biology
      • Database

    Protein Universe Atlas

    Interactive, annotated similarity network of all proteins
      • Proteins & Proteomes
      • Evolution & Phylogeny
      • Software tool

    OMAmer

    Alignment-free protein subfamily assignment
      • Proteins & Proteomes
      • Text mining & Machine learning
      • Database
      • Software tool

    MixTCRpred

    Predictor of TCR-epitope interactions
      • Proteins & Proteomes
      • Evolution & Phylogeny
      • Database
      • Software tool

    Orthology Benchmarking

    Quest for Orthologs benchmarking service