Structural Biology

SWISS-MODEL Repository

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Protein structure homology models

ModelArchive

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Repository of predicted macromolecular structure models

SwissDock

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Docking of small ligands into protein active sites

System Biology

MetaNetX

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Metabolic network repository & analysis

Cellosaurus

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Knowledge resource on cell lines

Genes & Genomes

Bgee

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Gene expression expertise

Evolution & Phylogeny

OMA

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Orthology inference among complete genomes

OrthoDB

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Ortholog evolutionary and functional annotations

Selectome

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Database of positive selection

Proteins & Proteomes

PROSITE

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Protein family and domain database

STRING

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Protein-protein interaction networks and enrichment analysis

UniProtKB

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Protein sequence database

ViralZone

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Fact sheets about viruses linked to sequence databases

ENZYME

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Enzyme nomenclature database

HAMAP

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UniProtKB family classification and annotation

SwissLipids

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Knowledge resource for lipids

VenomZone

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Portal to venom protein UniProtKB entries

Protein Universe Atlas

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Interactive, annotated similarity network of all proteins
Search results: database and tool description

10 resources found for Modelling and simulation

      • Structural analysis
      • Software tool

    SwissParam

    Topology and parameters for small molecules
      • Structural analysis
      • Software tool

    OpenStructure

    Molecular modelling and visualisation environment
      • Population genetics
      • Genomics
      • Software tool

    fastsimcoal

    Fast sequential Markov coalescent simulation of genomic data
      • Proteins & Proteomes
      • Structural analysis
      • Software tool

    SWISS-MODEL Workspace

    Fully automated protein structure homology-modeling server
      • Evolution biology
      • Genomics
      • Software tool

    CT-CBN

    Estimate conjunctive Bayesian networks
      • Proteins & Proteomes
      • Structural Biology
      • Database
      • Software tool

    SWISS-MODEL

    Protein structure homology-modelling
      • Evolution & Phylogeny
      • Software tool

    raxmlGUI

    raxmlGUI 2.0 is a graphical user interface to RAxML
      • Glycomics
      • Software tool

    HMO-Glycologue

    Simulator of Human Milk Oligosaccharide synthesis
      • Evolution biology
      • Systems Biology
      • Software tool

    CAPTAIN

    Decision-support tool for conservation area prioritization
      • Evolution biology
      • Genes & Genomes
      • Software tool

    BEAST2

    Bayesian evolutionary analysis by sampling trees