Structural Biology

SWISS-MODEL Repository

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Protein structure homology models

ModelArchive

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Repository of predicted macromolecular structure models

SwissDock

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Docking of small ligands into protein active sites

System Biology

MetaNetX

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Metabolic network repository & analysis

Cellosaurus

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Knowledge resource on cell lines

Genes & Genomes

Bgee

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Gene expression expertise

Evolution & Phylogeny

OMA

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Orthology inference among complete genomes

OrthoDB

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Ortholog evolutionary and functional annotations

Selectome

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Database of positive selection

Proteins & Proteomes

PROSITE

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Protein family and domain database

STRING

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Protein-protein interaction networks and enrichment analysis

UniProtKB

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Protein sequence database

ViralZone

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Factsheets about viruses linked to sequence databases

ENZYME

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Enzyme nomenclature database

HAMAP

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UniProtKB family classification and annotation

SwissLipids

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Knowledge resource for lipids

VenomZone

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Portal to venom protein UniProtKB entries

Protein Universe Atlas

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Interactive, annotated similarity network of all proteins
Search results: database and tool description

33 resources found for DNA

      • Population genetics
      • Software tool

    Arlequin

    An integrated software for population genetics data analysis
      • Genomics
      • Database
      • Software tool

    EPD

    Eukaryotic Promoter Database
      • Transcriptomics
      • Systems Biology
      • Database

    SwissRegulon

    Database of genome-wide annotations of regulatory sites
      • Genomics
      • Software tool

    SSA

    Analysis of nucleic acid sequence motifs
      • Genomics
      • Database
      • Software tool

    SNP2TFBS

    Regulatory SNPs affecting TF binding site affinity
      • Transcriptomics
      • Software tool

    SIBsim4

    Align expressed RNA sequences on a DNA template
      • Transcriptomics
      • Software tool

    QuasR

    Quantification and analysis of Short Reads
      • Structural analysis
      • Software tool

    OpenStructure

    Molecular modelling and visualisation environment
      • Genomics
      • Systems Biology
      • Database

    arrayMAP

    Curated array data repository for cancer genomics
      • Genomics
      • Software tool

    MADAP

    Clustering tool of genomic sites
      • Genomics
      • Software tool

    IScan

    Insertion sequence identification in whole genomes
      • Genes & Genomes
      • Evolution biology
      • Software tool

    GenomeHistory

    Gene duplicate identification
      • Genomics
      • Population genetics
      • Software tool

    fastsimcoal

    Fast sequential Markov coalescent simulation of genomic data
      • Genomics
      • Software tool

    FastEpistasis

    Tool for quantitative trait epistasis
      • Transcriptomics
      • Proteins & Proteomes
      • Software tool

    Translate

    Convert a nucleotide sequence to a protein sequence
      • Genomics
      • Database
      • Software tool

    ChIP-Seq

    ChIP-Seq data analysis tools
      • Transcriptomics
      • Systems Biology
      • Software tool

    CRUNCH

    Automated pipeline for ChIP-seq data analysis
      • Proteins & Proteomes
      • Software tool

    Dotlet

    Regions of close similarity in 2 sequences
      • Systems Biology
      • Software tool

    CLASTR

    Cellosaurus STR similarity search tool
      • Transcriptomics
      • Systems Biology
      • Software tool

    ISMARA

    Webservice for gene expression and epigenetic data analysis
      • Genomics
      • Systems Biology
      • Software tool

    Phylogibbs

    Regulatory sites in a collection of DNA sequences
      • Transcriptomics
      • Evolution & Phylogeny
      • Systems Biology
      • Database
      • Software tool

    SwissRegulon Portal

    Tools and data for regulatory genomics
      • Evolution & Phylogeny
      • Software tool

    raxmlGUI

    raxmlGUI 2.0 is a graphical user interface to RAxML
      • Metagenomics
      • Software tool

    mVIRs

    Prediction tool for inducible, bacteria-infecting viruses
      • Structural Biology
      • Database

    ModelArchive

    Repository of predicted macromolecular structure models
      • Genes & Genomes
      • Systems Biology
      • Database

    cancercelllines.org

    Genomic variants in human cancer cell lines
      • Genes & Genomes
      • Systems Biology
      • Software tool

    CREMA

    Cis-Regulatory Element Motif Activities
      • Transcriptomics
      • Systems Biology
      • Software tool

    DWT-online

    Dinucleotide Weight Tensor toolbox and visualisation service
      • Genomics
      • Database

    Pathoplexus

    Human viral pathogen genomic data sharing platform
      • Metagenomics
      • Database
      • Software tool

    Microbe Atlas

    Explore the microbiome of the world
      • Transcriptomics
      • Proteins & Proteomes
      • Systems Biology
      • Software tool

    NOODAI

    Multi-omics data analysis and integration
      • Genes & Genomes
      • Proteins & Proteomes
      • Software tool

    MetaGraph

    Petabase-scale sequence search