Structural Biology

SWISS-MODEL Repository

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Protein structure homology models

ModelArchive

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Repository of predicted macromolecular structure models

SwissDock

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Docking of small ligands into protein active sites

System Biology

MetaNetX

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Metabolic network repository & analysis

Cellosaurus

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Knowledge resource on cell lines

Genes & Genomes

Bgee

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Gene expression expertise

Evolution & Phylogeny

OMA

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Orthology inference among complete genomes

OrthoDB

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Ortholog evolutionary and functional annotations

Selectome

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Database of positive selection

Proteins & Proteomes

PROSITE

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Protein family and domain database

STRING

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Protein-protein interaction networks and enrichment analysis

UniProtKB

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Protein sequence database

ViralZone

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Factsheets about viruses linked to sequence databases

ENZYME

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Enzyme nomenclature database

HAMAP

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UniProtKB family classification and annotation

SwissLipids

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Knowledge resource for lipids

VenomZone

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Portal to venom protein UniProtKB entries

Protein Universe Atlas

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Interactive, annotated similarity network of all proteins
Search results: database and tool description

10 resources found for Clustered%20expression%20profiles

      • Genomics
      • Software tool

    MADAP

    Clustering tool of genomic sites
      • Proteins & Proteomes
      • Software tool

    Sulfinator

    Predict tyrosine sulfation sites in protein sequences
      • Proteins & Proteomes
      • Software tool

    UniProt BLAST

    BLAST sequence similarity search on the UniProt web site
      • Transcriptomics
      • Database
      • Software tool

    ASAP

    Web-based, cooperative portal for single-cell data analyses
      • Transcriptomics
      • Systems Biology
      • Software tool

    Cellstates

    Infering clusters of cells in scRNA-seq data
      • Proteins & Proteomes
      • Evolution & Phylogeny
      • Software tool

    OMAmer

    Alignment-free protein subfamily assignment
      • Transcriptomics
      • Systems Biology
      • Software tool

    Bonsai

    Analysis of single cell RNA-seq data
      • Transcriptomics
      • Database
      • Software tool

    Fly Cell Atlas

    Single-cell transcriptomes of the entire adult Drosophila
      • Transcriptomics
      • Database
      • Software tool

    Human Cell Atlas

    Mapping the human body at the cellular level