OpenStructure, the open-source molecular modelling environment that powers two SIB resources, SWISS-MODEL and CAMEO, recently introduced a bench marking suite to evaluate theoretical models against gold-standard reference structures. Read about it in this pre-print!
Use LipID Mapper, a SwissLipids service, to convert lipid identifiers between SwissLipids, ChEBI, LIPID MAPS, and HMDB, or to retrieve associated Rhea reaction or UniProtKB protein identifiers.
Revamped web site alert! ViralZone provides general molecular and epidemiological information, along with re-usable virion and genome figures, for all viral genera and families.
Interested in carbohydrates, lectins and more? A new release of Glyco@Expasy, a portal to web-based glycoinformatics resources developed world-wide, is out!
Guess what? There is a resource dedicated to moulting in arthropods, MoultDB, which combines morphological, genomic, and fossil data.
Check out two new open software tools, PolyHoop and SimuCell3D, to simulate cell and tissue dynamics in 2D and 3D, respectively!
Do you need to analyse high-dimensional scRNA-seq data? With the new SwissRegulon Bonsai tool, upload your mRNA count tables and reconstruct the tree that best captures the structure of the data.
A new BUSCO release is out! Powered by OrthoDB’s near-universal single-copy orthologs, BUSCO uniquely assesses completeness and redundancy across diverse genomic data, from single-isolate assemblies to metagenome-assembled genomes in both eukaryotes and prokaryotes.
Looking for a tool to perform tree-driven and alignment-free protein assignment to subfamilies? Try OMAmer! It limits over-specific subfamily assignments and is suited to phylogenomic databases with thousands of genomes.
Discover new outstanding data resources and software tools which have been recognized as SIB Remarkable Outputs 2024!