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HAMAP: Vibrio harveyi (strain ATCC BAA-1116 / BB120) complete proteome

General information

Species:  Vibrio harveyi (strain ATCC BAA-1116 / BB120)
Species code: VIBHB
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio (TaxID: 338187) [NEWT/ NCBI]
Description: Vibrio harveyi is a bioluminescent marine bacterium in which the luminescence genes are regulated by quorum sensing. Within the aqueous environment, this free living organism can be found throughout the water column, buried in the sediment, as well as on the exterior surfaces of marine organisms. Unlike the related bacterial species, Vibrio fischeri, which forms a mutualistic association with a squid species, Vibrio harveyi does not form any symbiotic relationship with any other organism. However, there is one well documented example of a relationship with another microorganism causing a phenomenon known as the Milky Sea effect. This occurs when large areas of the ocean are filled with luminescing V. harveyi living in association with colonies of the microalga Phaeocystis. Vibrio harveyi is a pathogen of fish and invertebrates, including sharks, sea-bass, seahorses, lobster, and shrimp. Its pathogenicity depends on the concentration of V. harveyi cells at a given time. Diseases caused by V. harveyi include eye-lesions, gastro-enteritis, vasculitis, and luminous vibriosis. Luminous vibriosis is a leading cause of death among commercially farmed shrimp and other aquaculture. The infection enters through the mouth and forms plaques, then spreads to the innards and the appendages. Loss of limb function and appendage degradation has been documented. Contamination can spread all the way to egg and larval tanks, thus causing an even bigger problem for shrimp farmers. Luminous vibriosis has been documented in many other crustaceans all of which glow in the dark when infected.
Properties: Presence of flagella: Yes
Interaction: Animal pathogen in Mammalia
Number of membranes: 2
Number of inteins:0
Statistics: Number of VIBHB entries in the UniProt Knowledgebase: 5608 (480 in UniProtKB/Swiss-Prot + 5128 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:   
Genome structure:
• Chromosome I EMBL accession number CP000789 (circular; 3,765,351 bp) (download entry) (download Genome Reviews).
• Chromosome II EMBL accession number CP000790 (circular; 2,204,018 bp) (download entry) (download Genome Reviews).
• Plasmid pVIBHAR EMBL accession number CP000791 (circular; 89,008 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] Bassler B., Clifton S.W., Fulton L., Delehaunty K., Fronick C., Harrison M., Markivic C., Fulton R., Tin-Wollam A.-M., Shah N., Pepin K., Nash W., Thiruvilangam P., Bhonagiri V., Waters C., Tu K.C., Irgon J., Wilson R.K. ;
Submitted (AUG-2007) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://genome.wustl.edu/genome.cgi?GENOME=Vibrio%20harveyi
Other web sites:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=19857
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Vhar_BAA1116
NMPDR: http://www.nmpdr.org/FIG/seedviewer.cgi?pattern=338187.4;page=SearchResult
 EBI Proteome Analysis page



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