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HAMAP: Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) complete proteome

General information

Species:  Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)
Species code: SACD2
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Saccharophagus (TaxID: 203122) [NEWT/ NCBI]
Description: Saccharophagus degradans (strain 2-40), formerly known as Microbulbifer degradans, is a Gram-negative, pleomorphic, aerobic, rod shaped, and motile bacterium. It belongs to a recently discovered group of marine bacteria that degrade and recycle complex carbohydrates. It was originally isolated from the salt marsh cord grass, Spartina alterniflora, in the Chesapeake Bay watershed. Saccharophagus degradans contains degradative surface protuberances, containing what is collectively termed hydrolosomes. The chitinase, agarase and alginase produced by S.degradans are not exported into the extracellular medium but are localized in the surface protuberances. Thanks to these protuberances, it is able to recycle a multitude of ICP (insoluble complex polysaccharides) including agar, chitin, alginic acid, carrageenan, cellulose, B-glucan, laminarin, pectin, pullulan, starch, and xylan. Agricultural, aquacultural, and algalcultural wastes threaten to become an increasingly serious problem. The wastes are mostly recalcitrant complex carbohydrates, namely cellulose, chitin and agar. The degradative protuberances of S.degradans may become important bioremediation tools, using them as concentrated, organized, protective enzyme packets.
Properties: Presence of flagella: Yes
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of SACD2 entries in the UniProt Knowledgebase: 3999 (369 in UniProtKB/Swiss-Prot + 3630 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    2-40 / ATCC 43961 / DSM 17024
Genome structure:
Chromosome EMBL accession number CP000282 (circular; 5,057,531 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Saunders E.H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M., Kyrpides N., Lykidis A., Richardson P., Weiner R. ;
"Complete sequence of Saccharophagus degradans 2-40.";
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://genome.jgi-psf.org/finished_microbes/micde/micde.home.html
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Saccharophagus&GLspecies=degradans&GLsupStrain=2-40
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid203122%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Sdeg_240
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p316_Sac_degra
 EBI Proteome Analysis page



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