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HAMAP: Rhizobium meliloti (Sinorhizobium meliloti) complete proteome

General information

Species:  Rhizobium meliloti (Sinorhizobium meliloti)
Species code: RHIME
Taxonomy: Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium (TaxID: 382) [NEWT/ NCBI]
Description: Gram-negative nitrogen-fixing bacteria living in soil and able to establish a symbiosis with host plants from the genera Medicago, Melilotus and Trigonella leading to the formation of nodules on roots. Its genome contains three replicons, a chromosome and two plasmids.
Properties: Presence of flagella: Yes
Interaction: Plant symbiont
Number of membranes: 2
Number of inteins:0
Statistics: Number of RHIME entries in the UniProt Knowledgebase: 6168 (844 in UniProtKB/Swiss-Prot + 5324 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    1021
Genome structure:
• Chromosome EMBL accession number AL591688 (circular; 3,654,135 bp) (download entry) (download Genome Reviews).
• Plasmid pSymA EMBL accession number AE006469 (circular; 1,354,226 bp) (download entry) (download Genome Reviews).
• Plasmid pSymB EMBL accession number AL591985 (circular; 1,683,333 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] MEDLINE=21396507; PubMed=11481430; [ NCBI , EBI , Israel , Japan ]
Capela D., Barloy-Hubler F., Gouzy J., Bothe G., Ampe F., Batut J., Boistard P., Becker A., Boutry M., Cadieu E., Dreano S., Gloux S., Godrie T., Goffeau A., Kahn D., Kiss E., Lelaure V., Masuy D., Pohl T., Portetelle D., Puehler A., Purnelle B., Ramsperger U., Renard C., Thebault P., Vandenbol M., Weidner S., Galibert F. ;
"Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021.";
Proc. Natl. Acad. Sci. U.S.A. 98:9877-9882(2001).
[2] MEDLINE=21368234; PubMed=11474104; [ NCBI , EBI , Israel , Japan ]
Galibert F., Finan T.M., Long S.R., Puehler A., Abola P., Ampe F., Barloy-Hubler F., Barnett M.J., Becker A., Boistard P., Bothe G., Boutry M., Bowser L., Buhrmester J., Cadieu E., Capela D., Chain P., Cowie A., Davis R.W., Dreano S., Federspiel N.A., Fisher R.F., Gloux S., Godrie T., Goffeau A., Golding B., Gouzy J., Gurjal M., Hernandez-Lucas I., Hong A., Huizar L., Hyman R.W., Jones T., Kahn D., Kahn M.L., Kalman S., Keating D.H., Kiss E., Komp C., Lelaure V., Masuy D., Palm C., Peck M.C., Pohl T.M., Portetelle D., Purnelle B., Ramsperger U., Surzycki R., Thebault P., Vandenbol M., Vorhoelter F.J., Weidner S., Wells D.H., Wong K., Yeh K.-C., Batut J. ;
"The composite genome of the legume symbiont Sinorhizobium meliloti.";
Science 293:668-672(2001).
[3] MEDLINE=21396509; PubMed=11481432; [ NCBI , EBI , Israel , Japan ]
Barnett M.J., Fisher R.F., Jones T., Komp C., Abola A.P., Barloy-Hubler F., Bowser L., Capela D., Galibert F., Gouzy J., Gurjal M., Hong A., Huizar L., Hyman R.W., Kahn D., Kahn M.L., Kalman S., Keating D.H., Palm C., Peck M.C., Surzycki R., Wells D.H., Yeh K.-C., Davis R.W., Federspiel N.A., Long S.R. ;
"Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid.";
Proc. Natl. Acad. Sci. U.S.A. 98:9883-9888(2001).
[4] MEDLINE=21396508; PubMed=11481431; [ NCBI , EBI , Israel , Japan ]
Finan T.M., Weidner S., Wong K., Buhrmester J., Chain P., Vorhoelter F.J., Hernandez-Lucas I., Becker A., Cowie A., Gouzy J., Golding B., Puehler A. ;
"The complete sequence of the 1,683-kb pSymB megaplasmid from the N2-fixing endosymbiont Sinorhizobium meliloti.";
Proc. Natl. Acad. Sci. U.S.A. 98:9889-9894(2001).
Web links:
Official genome site(s):
http://bioinfo.genopole-toulouse.prd.fr/annotation/iANT/bacteria/rhime/
http://cmgm.stanford.edu/~mbarnett/genome.htm
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Sinorhizobium&GLspecies=meliloti&GLstrain=Rm1021
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid266834%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Smel_1021
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p19_Sin_melil
RhizoDB: http://xbase.bham.ac.uk/rhizodb/genome.pl?id=1311
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntsm01
 EBI Proteome Analysis page



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