ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us HAMAP Swiss-Prot
Search for

HAMAP: Pseudomonas putida (strain KT2440) complete proteome

General information

Species:  Pseudomonas putida (strain KT2440)
Species code: PSEPK
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas (TaxID: 160488) [NEWT/ NCBI]
Description: Pseudomonas putida is a metabolically versatile saprophytic soil bacterium that has been certified as a biosafety host for the cloning of foreign genes. The bacterium is known for its diverse metabolism and potential for development of biopesticides and plant growth promoters because of its ability to colonize rhizosphere of crop plants.
Properties: Presence of flagella: Yes
Interaction: Plant saprophyte
Number of membranes: 2
Number of inteins:0
Statistics: Number of PSEPK entries in the UniProt Knowledgebase: 5313 (665 in UniProtKB/Swiss-Prot + 4648 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    KT2440
Genome structure:
Chromosome EMBL accession number AE015451 (circular; 6,181,863 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] MEDLINE=22423060; PubMed=12534463; [ NCBI , EBI , Israel , Japan ]
Nelson K.E., Weinel C., Paulsen I.T., Dodson R.J., Hilbert H., Martins dos Santos V.A.P., Fouts D.E., Gill S.R., Pop M., Holmes M., Brinkac L.M., Beanan M.J., DeBoy R.T., Daugherty S.C., Kolonay J.F., Madupu R., Nelson W.C., White O., Peterson J.D., Khouri H.M., Hance I., Chris Lee P., Holtzapple E.K., Scanlan D., Tran K., Moazzez A., Utterback T.R., Rizzo M., Lee K., Kosack D., Moestl D., Wedler H., Lauber J., Stjepandic D., Hoheisel J., Straetz M., Heim S., Kiewitz C., Eisen J.A., Timmis K.N., Duesterhoeft A., Tuemmler B., Fraser C.M. ;
"Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.";
Environ. Microbiol. 4:799-808(2002).
Web links:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Pseudomonas&GLspecies=putida&GLstrain=KT2440
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid160488%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Pput_KT2440
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Pseudomonas_putida.html
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p267_Pse_putid
PutidaList: http://bioinfo.hku.hk/GenoList/index.pl?database=putidalist
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=gpp
 EBI Proteome Analysis page



Tools

ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us HAMAP Swiss-Prot
 Hosted by ch flag SIB Switzerland Mirror sites: Australia  Brazil  Canada  China  Korea
Search for