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HAMAP: Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) complete proteome

General information

Species:  Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
Species code: PSEF5
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas (TaxID: 220664) [NEWT/ NCBI]
Description: Pseudomonas fluorescens Pf-5 is a plant commensal bacterium that inhabits the rhizosphere of many plants and suppresses plant diseases caused by soilborne plant pathogens. It produces several antibiotics and secondary metabolites.
Properties: Presence of flagella: Yes
Interaction: Plant commensal
Number of membranes: 2
Number of inteins:0
Statistics: Number of PSEF5 entries in the UniProt Knowledgebase: 6137 (505 in UniProtKB/Swiss-Prot + 5632 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    Pf-5 / ATCC BAA-477
Genome structure:
Chromosome EMBL accession number CP000076 (circular; 7,074,893 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] PubMed=15980861; [ NCBI , EBI , Israel , Japan ]
Paulsen I.T., Press C.M., Ravel J., Kobayashi D.Y., Myers G.S.A., Mavrodi D.V., DeBoy R.T., Seshadri R., Ren Q., Madupu R., Dodson R.J., Durkin A.S., Brinkac L.M., Daugherty S.C., Sullivan S.A., Rosovitz M.J., Gwinn M.L., Zhou L., Schneider D.J., Cartinhour S.W., Nelson W.C., Weidman J., Watkins K., Tran K., Khouri H., Pierson E.A., Pierson L.S. III, Thomashow L.S., Loper J.E. ;
"Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.";
Nat. Biotechnol. 23:873-878(2005).
Web links:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Pseudomonas&GLspecies=fluorescens&GLstrain=Pf-5
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid220664%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Pful_PF5
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p327_Pse_fluor
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=gpf
 EBI Proteome Analysis page



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