ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us HAMAP Swiss-Prot
Search for

HAMAP: Photobacterium profundum (Photobacterium sp. (strain SS9)) complete proteome

General information

Species:  Photobacterium profundum (Photobacterium sp. (strain SS9))
Species code: PHOPR
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium (TaxID: 74109) [NEWT/ NCBI]
Description: Not yet available.
Properties: Presence of flagella: Yes
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of PHOPR entries in the UniProt Knowledgebase: 5328 (590 in UniProtKB/Swiss-Prot + 4738 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    SS9
Genome structure:
• Chromosome 1 EMBL accession number CR354531 (circular; 4,085,304 bp) (download entry) (download Genome Reviews).
• Chromosome 2 EMBL accession number CR354532 (circular; 2,237,943 bp) (download entry) (download Genome Reviews).
• Plasmid pPBPR1 EMBL accession number CR377818 (circular; 80,033 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] PubMed=15746425; [ NCBI , EBI , Israel , Japan ]
Vezzi A., Campanaro S., D'Angelo M., Simonato F., Vitulo N., Lauro F.M., Cestaro A., Malacrida G., Simionati B., Cannata N., Romualdi C., Bartlett D.H., Valle G. ;
"Life at depth: Photobacterium profundum genome sequence and expression analysis.";
Science 307:1459-1461(2005).
Web links:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Photobacterium&GLspecies=profundum&GLstrain=SS9
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid74109%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Ppro_SS9
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Photobacterium_profundum.html
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p13128_Pho_profu
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntpp01
 EBI Proteome Analysis page



Tools

ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us HAMAP Swiss-Prot
 Hosted by ch flag SIB Switzerland Mirror sites: Australia  Brazil  Canada  China  Korea
Search for