Search for
You are here: ExPASy CH  > Databases  > Around UniProtKB  > HAMAP

Home Proteomes Families Documents Downloads Links
HAMAP: Lactobacillus plantarum complete proteome

General information

Species:  Lactobacillus plantarum
Species code: LACPL
Taxonomy: Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus (TaxID: 1590) [NEWT/ NCBI]
Description: Lactobacillus plantarum is a flexible and versatile species that is encountered in a variety of environmental niches, including some dairy, meat, and many vegetable and plant fermentations. L.plantarum is frequently encountered as a natural inhabitant of the human gastrointestinal tract.
Properties: Presence of flagella: No
Human pathogen: No
Interaction: Animal commensal in Mammalia
Number of membranes: 1
Number of inteins:0
Statistics: Number of LACPL entries in the UniProt Knowledgebase: 3051 (453 in UniProtKB/Swiss-Prot + 2598 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC BAA-793 / NCIMB 8826 / WCFS1
Genome structure:
• Chromosome EMBL accession number AL935263 (circular; 3,308,274 bp) (download entry) (download Genome Reviews).
• Plasmid pWCFS101 EMBL accession number CR377164 (circular; 1,917 bp) (download entry) (download Genome Reviews).
• Plasmid pWCFS102 EMBL accession number CR377165 (circular; 2,365 bp) (download entry) (download Genome Reviews).
• Plasmid pWCFS103 EMBL accession number CR377166 (circular; 36,069 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] MEDLINE=22480296; PubMed=12566566; [ NCBI , EBI , Israel , Japan ]
Kleerebezem M., Boekhorst J., van Kranenburg R., Molenaar D., Kuipers O.P., Leer R., Tarchini R., Peters S.A., Sandbrink H.M., Fiers M.W.E.J., Stiekema W., Klein Lankhorst R.M., Bron P.A., Hoffer S.M., Nierop Groot M.N., Kerkhoven R., De Vries M., Ursing B., De Vos W.M., Siezen R.J. ;
"Complete genome sequence of Lactobacillus plantarum WCFS1.";
Proc. Natl. Acad. Sci. U.S.A. 100:1990-1995(2003).
[2] PubMed=15746322; [ NCBI , EBI , Israel , Japan ]
van Kranenburg R., Golic N., Bongers R., Leer R.J., de Vos W.M., Siezen R.J., Kleerebezem M. ;
"Functional analysis of three plasmids from Lactobacillus plantarum.";
Appl. Environ. Microbiol. 71:1223-1230(2005).
Web links:
Official genome site(s):
http://www.cmbi.kun.nl/lactobacillus/
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Lactobacillus&GLspecies=plantarum&GLstrain=WCFS1
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid220668%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Lpla_WCFS1
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Lactobacillus_plantarum.html
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p356_Lac_plant
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntlp01
 EBI Proteome Analysis page



Tools