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HAMAP: Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) complete proteome

General information

Species:  Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
Species code: GLUDA
Taxonomy: Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter (TaxID: 272568) [NEWT/ NCBI]
Description: Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) is an aerobic acid-tolerant bacterium isolated from sugarcane roots in Brazil. This organism is endophytic and colonizes internal plant tissues, establishing a symbiotic relationship with its host. This bacterium has been found in sugarcane, coffee, rice, tea, and other plants. The nitrogen-fixation systems of the bacterium provide the plant with essential nitrogenous compounds while the plant provides a protected environment for the bacterium to grow in. Nitrogen-fixation is important for sugarcane production, and this organism can fix nitrogen even in the presence of nitrate.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: Plant endophyte
Number of membranes: 2
Number of inteins:0
Statistics: Number of GLUDA entries in the UniProt Knowledgebase: 3788 (202 in UniProtKB/Swiss-Prot + 3586 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC 49037 / DSM 5601 / PAl5
Genome structure:
• Chromosome EMBL accession number AM889285 (circular; 3,944,163 bp) (download entry) (download Genome Reviews).
• Plasmid pGDIPal5I EMBL accession number AM889287 (circular; 38,818 bp) (download entry) (download Genome Reviews).
• Plasmid pGDIPal5II EMBL accession number AM889286 (circular; 16,610 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] Bertalan M., Baldani I.J., Ferreira P. ;
"Gluconacetobacter diazotrophicus Pal5 complete genome.";
Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases.
Web links:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=21071
Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/project.php?pid=377
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Gdia_PAl5
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p377_Glu_diazo
 EBI Proteome Analysis page

Strain:    ATCC 49037 / DSM 5601 / PAl5
Genome structure:
• Chromosome EMBL accession number CP001189 (circular; 3,887,492 bp) (download entry) (download Genome Reviews).
• Plasmid pGDIA01 EMBL accession number CP001190 (circular; 27,455 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Triplett E.W. ;
"Complete sequence of chromosome of Gluconacetobacter diazotrophicus PAl 5.";
Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases.
[2] Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Triplett E.W. ;
"Complete sequence of plasmid of Gluconacetobacter diazotrophicus PAl 5.";
Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://genome.jgi-psf.org/draft_microbes/gludi/gludi.home.html
Other web sites:
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Gdia_PAl5_JGI
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p21071_Glu_diazo
 EBI Proteome Analysis page



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