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HAMAP: Escherichia coli O9:H4 (strain HS) complete proteome

General information

Species:  Escherichia coli O9:H4 (strain HS)
Species code: ECOHS
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia (TaxID: 331112) [NEWT/ NCBI]
Description: Escherichia coli is a Gram-negative straight rod, which either uses peritrichous flagella for mobility or is nonmotile. It is a facultatively anaerobic chemoorganotroph capable of both respiratory and fermentative metabolism. E.coli serves a useful function in the body by suppressing the growth of harmful bacterial species and by synthesising appreciable amounts of vitamins. It is an important component of the biosphere. It colonizes the lower gut of animals and survives when released to the natural environment, allowing widespread dissemination to new hosts. Pathogenic E.coli strains are responsible for infection of the enteric, urinary, pulmonary and nervous systems.
E.coli HS is a human commensal isolate that was originally isolated from a laboratory scientist at the Walter Reed Army Institute of Research. In human challenge experiments, strain HS colonized the human gastrointestinal tract with no overt signs of disease. The genome sequence of strain HS represents the genomic baseline for colonization of the human gastrointestinal tract. This isolate is serotype O9, motile, competent and amenable to genetic manipulation.
Properties: Presence of flagella: Yes
Interaction: Animal commensal in Mammalia
Number of membranes: 2
Number of inteins:0
Statistics: Number of ECOHS entries in the UniProt Knowledgebase: 4310 (747 in UniProtKB/Swiss-Prot + 3563 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    HS
Genome structure
Chromosome EMBL accession number CP000802 (circular; 4,643,538 bp) (download entry) (download Genome Reviews).
References
[1] Rasko D.A., Rosovitz M.J., Kaper J.B., Nataro J.P., Myers G.S.A., Seshadri R., Cer R.Z., Ravel J. ;
Submitted (AUG-2007) to the EMBL/GenBank/DDBJ databases.
Web links
Official genome site(s):
http://msc.tigr.org/e_coli_and_shigella/escherichia_coli_hs/index.shtml
Other web sites:
coliBASE: http://xbase.bham.ac.uk/colibase/genome.pl?id=1549
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13959
ERIC: http://www.ericbrc.org/portal/eric/ecolihs
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Ecol_HS
 EBI Proteome Analysis page



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