Species code:	DINSH
Taxonomy:	Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter (TaxID: 398580) [NEWT/ NCBI]
Description:	Dinoroseobacter shibae (strain DFL 12) was isolated from cultured cells of the marine dinoflagellate Prorocentrum lima. The bacteria have unusual pigmentation; they are pink to light red in liquid culture in the dark and beige when grown in the light. On complex solid media they are wine-red. Individual cells grow as cocci 0.3 to 0.7 um in width and 0.3 to 2.0 um in length, surrounded or not by an extracellular polymer. They require minimally 1% seawater for growth. D.shibae is an aerobic anoxygenic phototroph (AAP), that is, it is incapable of anaerobic photosynthesis, and performs efficient photoinduced electron transfer only under aerobic conditions. It contains bacteriochlorophyll a and spheroidenone as its only carotenoid.
Properties:	Presence of flagella: Yes Interaction: No Number of membranes: 2 Number of inteins:0
Statistics:	Number of DINSH entries in the UniProt Knowledgebase: 4076 (230 in UniProtKB/Swiss-Prot + 3846 in UniProtKB/TrEMBL)

Genome structure:	• Chromosome EMBL accession number CP000830 (circular; 3,789,584 bp) (download entry) (download Genome Reviews). • Plasmid pDSHI01 EMBL accession number CP000831 (circular; 190,506 bp) (download entry) (download Genome Reviews). • Plasmid pDSHI02 EMBL accession number CP000832 (circular; 152,970 bp) (download entry) (download Genome Reviews). • Plasmid pDSHI03 EMBL accession number CP000833 (circular; 126,304 bp) (download entry) (download Genome Reviews). • Plasmid pDSHI04 EMBL accession number CP000834 (circular; 86,208 bp) (download entry) (download Genome Reviews). • Plasmid pDSHI05 EMBL accession number CP000835 (circular; 72,296 bp) (download entry) (download Genome Reviews).
Reference(s):	[1] Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Detter J.C., Han C., Tapia R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Richardson P. ; "Complete sequence of chromosome of Dinoroseobacter shibae DFL 12."; Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases. [2] Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Detter J.C., Han C., Tapia R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Richardson P. ; "Complete sequence of plasmid 1 of Dinoroseobacter shibae DFL 12."; Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases. [3] Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Detter J.C., Han C., Tapia R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Richardson P. ; "Complete sequence of plasmid 2 of Dinoroseobacter shibae DFL 12."; Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases. [4] Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Detter J.C., Han C., Tapia R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Richardson P. ; "Complete sequence of plasmid 3 of Dinoroseobacter shibae DFL 12."; Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases. [5] Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Detter J.C., Han C., Tapia R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Richardson P. ; "Complete sequence of plasmid 4 of Dinoroseobacter shibae DFL 12."; Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases. [6] Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Detter J.C., Han C., Tapia R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Richardson P. ; "Complete sequence of plasmid 5 of Dinoroseobacter shibae DFL 12."; Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases.
Web links:	Official genome site(s): http://genome.jgi-psf.org/draft_microbes/dinsh/dinsh.home.html Other web sites: Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=17417 GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Dshi_DFL12  EBI Proteome Analysis page

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