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HAMAP: Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) complete proteome

General information

Species:  Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)
Species code: DESVH
Taxonomy: Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio (TaxID: 882) [NEWT/ NCBI]
Description: Desulfovibrio vulgaris is a model for the study of the energy metabolism of sulfate-reducing bacteria. Sulfate-reducing bacteria have an important economic impact because they are involved in biocorrosion of ferrous metals in anaerobic environment. For example, their metabolism has several negative consequences for the petroleum industry (e.g. corrosion of the pumping machinery). These bacteria also contribute to bioremediation of toxic metal ions.
Properties: Presence of flagella: No
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of DESVH entries in the UniProt Knowledgebase: 3517 (358 in UniProtKB/Swiss-Prot + 3159 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    Hildenborough / ATCC 29579 / NCIMB 8303
Genome structure:
• Chromosome EMBL accession number AE017285 (circular; 3,570,858 bp) (download entry) (download Genome Reviews).
• Plasmid pDV EMBL accession number AE017286 (circular; 202,301 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] PubMed=15077118; [ NCBI , EBI , Israel , Japan ]
Heidelberg J.F., Seshadri R., Haveman S.A., Hemme C.L., Paulsen I.T., Kolonay J.F., Eisen J.A., Ward N.L., Methe B.A., Brinkac L.M., Daugherty S.C., DeBoy R.T., Dodson R.J., Durkin A.S., Madupu R., Nelson W.C., Sullivan S.A., Fouts D.E., Haft D.H., Selengut J., Peterson J.D., Davidsen T.M., Zafar N., Zhou L., Radune D., Dimitrov G., Hance M., Tran K., Khouri H.M., Gill J., Utterback T.R., Feldblyum T.V., Wall J.D., Voordouw G., Fraser C.M. ;
"The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.";
Nat. Biotechnol. 22:554-559(2004).
Web links:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Desulfovibrio&GLspecies=vulgaris&GLstrain=Hildenborough
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid882%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Dvul_HILDENBOROUGH
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Desulfovibrio_vulgaris.html
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p51_Des_vulga
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=gdv
 EBI Proteome Analysis page



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