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Showing 6 records out of 6 total

GlycanMass [SIB: Swiss-Prot group]
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Categories: proteomics, (post-translational modification) - Software type(s): website - tool
Calculate the mass of an oligosaccharide structure.
keywords: glycomics, glycosylation, oligosaccharide (glycan, sugar), post-translational modification (PTM), sequence analysis
GlycoMod [SIB: Swiss-Prot group]
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Categories: proteomics, (protein sequences and identification, mass spectrometry and 2-DE data, post-translational modification) - Software type(s): website - tool
Predict possible oligosaccharide structures that occur on proteins from their experimentally determined masses. The program can be used for free or derivatized oligosaccharides and for glycopeptides.
keywords: glycomics, glycosylation, mass spectrometry (MS, MS/MS, LC-MS), molecular weight (MW), oligosaccharide (glycan, sugar), peptide mass fingerprinting, post-translational modification (PTM), sequence analysis, sugar epitope
GlycoSuiteDB [SIB: Proteome Informatics group]
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Categories: proteomics, (post-translational modification) - Software type(s): website - database
GlycoSuiteDB is a curated and annotated glycan database
keywords: glycomics, glycosylation, mass spectrometry (MS, MS/MS, LC-MS), oligosaccharide (glycan, sugar), post-translational modification (PTM), sugar epitope
Glycoviewer [UNSW]
Categories: proteomics, (mass spectrometry and 2-DE data) - Software type(s): website - tool
Visualisation tool for representing a set of glycan structures as a summary figure of all structural features using icons and colours recommended by the Consortium for Functional Glycomics (CFG).
keywords: glycomics, oligosaccharide (glycan, sugar)
SugarBind [SIB: Proteome Informatics group]
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Categories: proteomics, (post-translational modification) - Software type(s): website - database
This database provides a list of known carbohydrate sequences to which pathogenic organisms specifically adhere. The data were compiled through an exhaustive search of literature published over the past 30 years by glycobiologists, microbiologists, and medical histologists.
keywords: glycomics, glycosylation, oligosaccharide (glycan, sugar), pathogen, post-translational modification (PTM), sugar epitope
UniProtKB [SIB: Swiss-Prot group]
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Categories: proteomics, (protein sequences and identification, protein characterisation and function, similarity search/alignment) - Software type(s): website - database
The UniProt Knowledgebase (UniProtKB) is the central hub for the collection of functional information on proteins with accurate, consistent and rich annotation. It consists of: UniProtKB/Swiss-Prot (manually-annotated records and curator-evaluated computational analysis) and UniProtKB/TrEMBL (computationally analyzed records awaiting manual annotation).
keywords: disease mutation, enzyme (catalytic activity), functional annotation, gene nomenclature, glycosylation, oligosaccharide (glycan, sugar), pathway, physico-chemical property, post-translational modification (PTM), protein data bank (PDB), protein domain, protein family, protein function, protein nomenclature, protein sequence analysis (primary structure), protein variation (variant), proteome database, quaternary structure, sequence alignment, sequence analysis, tertiary structure, transmembrane (trans-membrane)