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Showing 3 records out of 3 total

Categories: genomics, (characterisation/annotation), transcriptomics - Software type(s): website - database/tool
CLIPZ supports the automatic functional annotation of short reads resulting primarily from crosslinking and immunoprecipitation experiments (CLIP) performed with RNA-binding proteins in order to identify the binding sites of these proteins. The functional annotation could be also applied to short reads resulting from other type of experiments such as mRNA-Seq, Digital Gene Expression, small RNA cloning, etc. CLIPZ enables visualization, mining and analysis of data sets.
Categories: genomics, (characterisation/annotation), phylogeny/evolution - Software type(s): website - database
miROrtho contains predictions of precursor miRNA genes covering many animal genomes combining evidence from sequence homology and Support Vector Machine classifiers. We provide both consistent extrapolation of already known miRBase families and novel miRNA predictions by our SVM and orthology pipeline.
Categories: genomics, (characterisation/annotation), transcriptomics - Software type(s): website - database/tool
smiRNAdb is a database containing expression information for human, mouse, rat, zebrafish, worm and fruitfly small RNAs (mostly miRNAs)