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External resources - (No support from the ExPASy Team)Showing 7 records out of 7 total
Digitized version of the Roche Applied Science "Biochemical Pathways" wall chart. The map, linked to relevant ENZYME database entries, can be browsed online, and keyword searches are available.
ENZYME is a repository of information relative to the nomenclature of enzymes. It is primarily based on the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB) and it describes each type of characterized enzyme for which an EC (Enzyme Commission) number has been provided.
MetaNetX.org allows to access, analyse and manipulate genome-scale metabolic networks as well as biochemical pathways. It consistently integrates data from various public resources and makes the data accessible in a standardized format using a common namespace. Models can be interactively compared, analysed (e.g. detection of dead-end metabolites/reactions, flux balance analysis or simulation of reaction/gene knockouts), manipulated and exported. Users can upload their own metabolic models.
Predict potential cleavage sites cleaved by proteases or chemicals in a given protein sequence. PeptideCutter returns the query sequence with the possible cleavage sites mapped on it and/or a table of cleavage site positions.
UniPathway is a curated resource of metabolic pathways for the UniProtKB/Swiss-Prot knowledgebase.
The UniProt Knowledgebase (UniProtKB) is the central hub for the collection of functional information on proteins with accurate, consistent and rich annotation. It consists of: UniProtKB/Swiss-Prot (manually-annotated records and curator-evaluated computational analysis) and UniProtKB/TrEMBL (computationally analyzed records awaiting manual annotation).
keywords: disease mutation, enzyme (catalytic activity), functional annotation, gene nomenclature, glycosylation, oligosaccharide (glycan, sugar), pathway, physico-chemical property, post-translational modification (PTM), protein data bank (PDB), protein domain, protein family, protein function, protein nomenclature, protein sequence analysis (primary structure), protein variation (variant), proteome database, quaternary structure, sequence alignment, sequence analysis, tertiary structure, transmembrane (trans-membrane)
UniProtKB/Swiss-Prot is the manually annotated component of UniProtKB. It contains manually-annotated (reviewed) records with information extracted from the literature and curator-evaluated computational analysis.
keywords: disease mutation, enzyme (catalytic activity), family database, functional annotation, gene nomenclature, glycosylation, influenza, pathway, physico-chemical property, post-translational modification (PTM), protein data bank (PDB), protein domain, protein family, protein function, protein nomenclature, protein sequence analysis (primary structure), protein variation (variant), quaternary structure, secondary structure, sequence alignment, sequence analysis, tertiary structure, topology prediction, transmembrane (trans-membrane)