Databases

• PROSITE • protein domains and families • [more]
  PROSITE  •  PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them. [less]

• HAMAP • Microbial proteome annotation in UniProtKB • [more]
  HAMAP  •  HAMAP is a system, based on manual protein annotation, that identifies and semi-automatically annotates proteins that are part of well-conserved families or subfamilies: the HAMAP families. HAMAP is based on manually created family rules and is applied to bacterial, archaeal and plastid-encoded proteins. [less]
• MyHits • protein domains database and tools • [more]
  MyHits  •  Hits is a free database devoted to protein domains. It is also a collection of tools for the investigation of the relationships between protein sequences and motifs described on them. These motifs are defined by an heterogeneous collection of predictors, which currently includes regular expressions, generalized profiles and hidden Markov models. [less]
• PANDITplus • protein families and domains resources • [more]
  PANDITplus  •  Along with sequence data for Pfam gene families and protein domains, PANDITplus provides access to data on protein interactions, functional and chemical pathway annotation, gene expression, and association with disease, and pre-computed estimates from evolutionary codon models. [less]

Tools

• HAMAP • Microbial proteome annotation in UniProtKB • [more]
  HAMAP  •  HAMAP is a system, based on manual protein annotation, that identifies and semi-automatically annotates proteins that are part of well-conserved families or subfamilies: the HAMAP families. HAMAP is based on manually created family rules and is applied to bacterial, archaeal and plastid-encoded proteins. [less]
• HamapScan • scan sequences against HAMAP • [more]
  HamapScan  •  Scan several sequences or a whole genome (all ORFs) against the HAMAP families, with partial or complete annotation in UniProtKB/Swiss-Prot format. [less]
• MyDomains • Image Creator • [more]
  MyDomains  •  Image Creator for linear (multi) domain views [less]
• MyHits • protein domains database and tools • [more]
  MyHits  •  Hits is a free database devoted to protein domains. It is also a collection of tools for the investigation of the relationships between protein sequences and motifs described on them. These motifs are defined by an heterogeneous collection of predictors, which currently includes regular expressions, generalized profiles and hidden Markov models. [less]
• PRATT • patterns in protein sequences • [more]
  PRATT  •  Tool to discover patterns that are conserved in a set of protein sequences. The patterns are reported using the PROSITE syntax. [less]
• ScanProsite • scan protein sequence(s) against PROSITE • [more]
  ScanProsite  •  Scan protein sequence(s) against PROSITE, or search for hits by specific motif(s) in protein sequence database(s). ScanProsite may be used alternatively in quick scan mode or advanced scan mode.  [less]