SIB COVID-19 Integrated Knowledgebase

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• • • Proteins & Proteomes

  • • Database

  ViralZone

  Fact sheets about viruses; linked to sequence databases.
• • • Glycomics

  • • Database

  SugarBind

  Pathogen Sugar-Binding Database
• • • Genomics

  • • Database

  OpenFlu

  Database for human and animal influenza virus
• • • Transcriptomics
  • • Population genetics

  • • Software tool

  V-pipe

  Viral genomics pipeline
• • • Proteins & Proteomes

  • • Database

  STRING-covid

  New COVID-19 oriented version of the STRING database
• • • Genes & Genomes
  • • Evolution & Phylogeny

  • • Software tool

  BEAST2 - COVID-19 Monitoring

  Epidemiological dynamics in real-time
• • • Text mining & Machine learning

  • • Software tool

  Computational Linguistics for COVID-19

  Central hub in computational linguistics for COVID-19
• • • Genes & Genomes
  • • Population genetics

  • • Software tool

  COVID-19 Scenarios

  Public health planning tool for COVID-19 outbreaks
• • • Transcriptomics
  • • Population genetics

  • • Software tool

  V-pipe SARS-CoV-2

  V-pipe pipeline applied to SARS-CoV-2 sequencing data
• • • Text mining & Machine learning

  • • Software tool

  CovidTriage

  Rank the COVID-19 literature according to COVoc ontology
• • • Genes & Genomes

  • • Database
  • • Software tool

  SPSP | Swiss Pathogen Surveillance Platform

  A secure NGS One-health online platform
• • • Genomics
  • • Evolution biology
    • , Population genetics

  • • Software tool

  Nextclade

  Clade assignment, mutation calling & QC for virus sequences
• • • Genomics
  • • Evolution biology

  • • Database

  CoV-Spectrum

  Comprehensive dashboard to analyze SARS-CoV-2 variants
• • • Evolution biology

  • • Software tool

  Nextstrain

  Impact of pathogen genome data on science and public health