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Showing 7 records out of 27 total
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Categories: proteomics, (protein structure) - Software type(s): website - tool
Secondary structure prediction.
Categories: proteomics, (function analysis, protein modifications) - Software type(s): website - tool
Classification and secondary structure srediction of membrane proteins.
Categories: proteomics, (protein modifications) - Software type(s): website - tool
TMHMM is a membrane protein topology prediction method based on a hidden Markov model (HMM). It predicts transmembrane helices in proteins.
Categories: proteomics, (protein structure) - Software type(s): website, CLI - tool
The TMpred program makes a prediction of membrane-spanning regions and their orientation. The algorithm is based on the statistical analysis of TMbase, a database of naturally occurring transmembrane proteins
Categories: glycomics - Software type(s): website - database
UniCarb-DB stores data and information on glycan structures and associated fragment data characterised by LC-MS/MS strategies. It is annotated with high-quality datasets.
Categories: proteomics, (protein sequences and identification, function analysis, protein modifications, protein interactions) - Software type(s): website - database
UniProtKB/Swiss-Prot is the manually annotated component of UniProtKB (produced by the UniProt consortium). It contains manually-annotated (reviewed) records with information extracted from the literature and curator-evaluated computational analysis.
Categories: proteomics, (sequence sites, features and motifs) - Software type(s): website, GUI - tool
WeStBESel is a tool to help selecting the most relevant B-cell epitopes according to the user needs (i.e. vaccines, diagnostic test, etc). We use a mixed approach by combining : physico-chemical property-based approaches (conservation intra and interspecies, PTM, hydrophobicity, solvent accessibility, disorder and mutations), sliding windows algorithm paired with five of the best B-cell epitopes prediction tools (ABCPred, AAP, BCPred, BepiPred, SVMTrip).
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