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Showing 13 records out of 13 total

Categories: proteomics, (protein modifications) - Software type(s): website - tool
The ChloroP server predicts the presence of chloroplast transit peptides (cTP) in protein sequences and the location of potential cTP cleavage sites.
Categories: proteomics, (function analysis) - Software type(s): website - tool
MitoFates predicts mitochondrial presequence, a cleavable localization signal located in N-terminal, and its cleaved position.
Categories: proteomics, (protein modifications) - Software type(s): website - tool
MitoProt calculates the N-terminal protein region that can support a mitochondrial targeting sequence and the cleavage site.
Categories: proteomics, (protein modifications) - Software type(s): website - tool
NetNES 1.1 server predicts leucine-rich nuclear export signals (NES) in eukaryotic proteins using a combination of neural networks and hidden Markov models.
Categories: proteomics - Software type(s): website - tool
PATS identifies amino acid sequences that are potentially targeted to the apicoplast matrix of Plasmodium falciparum. Secondary analysis of candidate sequences is required for confirmation.
Categories: proteomics, (protein modifications) - Software type(s): website - tool
Prediction of transmembrane topology and signal peptides from the amino acid sequence of a protein.
Categories: proteomics, (protein modifications) - Software type(s): website - tool
Predotar was designed for systematic screening of large batches of proteins for identifying putative targeting sequences, and recognizes the N-terminal targeting sequences of classically targeted precursor proteins. It provides a probability estimate as to whether the sequence contains a mitochondrial, plastid or ER targeting sequence.
Categories: proteomics, (function analysis) - Software type(s): website - tool
PSORT family of programs for subcellular localization prediction
Categories: proteomics, (protein modifications) - Software type(s): website - tool
predict peroxisomal targeting signal 1 containing proteins
Categories: proteomics, (protein modifications) - Software type(s): website - tool
The SecretomeP 2.0 server produces ab initio predictions of non-classical i.e. not signal peptide triggered protein secretion. The method queries a large number of other feature prediction servers to obtain information on various post-translational and localizational aspects of the protein, which are integrated into the final secretion prediction.
Categories: proteomics, (protein modifications) - Software type(s): website, CLI - tool
SignalP predicts the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms: Gram-positive prokaryotes, Gram-negative prokaryotes, and eukaryotes. The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction based on a combination of several artificial neural networks.
Categories: proteomics, (function analysis, protein modifications) - Software type(s): website - tool
TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on the predicted presence of any of the N-terminal presequences: chloroplast transit peptide (cTP), mitochondrial targeting peptide (mTP) or secretory pathway signal peptide (SP).
Categories: proteomics, (protein modifications) - Software type(s): website - tool
TatP 1.0 server predicts the presence and location of Twin-arginine signal peptide cleavage sites in bacteria. The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction based on a combination of two artificial neural networks. A postfiltering of the output based on regular expressions is possible.