ImmunoDB

- Evolution & Phylogeny

- Database

miROrtho

Catalogue of animal microRNA genes

- Genomics
- Evolution & Phylogeny

- Software tool

Newick Utilities

High-throughput phylogenetic tree processing

- Genomics
- Evolution biology
- , Population genetics

- Software tool

fastsimcoal

Fast sequential Markov coalescent simulation of genomic data

- Genomics
- Evolution biology

- Database
- Software tool

CEGA

Conserved Elements from Genomic Alignments

- Proteins & Proteomes

- Database

ViralZone

Fact sheets about viruses; linked to sequence databases.

- Evolution & Phylogeny

- Database

OrthoDB

Ortholog evolutionary and functional annotations

- Proteins & Proteomes

- Database

UniProtKB/Swiss-Prot

Protein knowledgebase

- Proteins & Proteomes

- Database

UniProtKB

Protein sequence database

- Proteins & Proteomes

- Software tool

HAMAP-Scan

Scanning of protein sequences against HAMAP families

- Proteins & Proteomes

- Database
- Software tool

HAMAP

UniProtKB family classification and annotation

- Genes & Genomes
- Evolution biology

- Database
- Software tool

SwissOrthology

One-stop shop for orthologs

- Genomics

- Database

TASmania

Toxin-antitoxin database

- Genomics

- Software tool

TASer

Search tool associated to TASmania

- Evolution & Phylogeny

- Database

OrthoDB SPARQL endpoint

Evolutionary and functional annotations of orthologs

- Proteins & Proteomes

- Database

UniProt SPARQL endpoint

Query UniProt + related data in a powerful SQL-like language

- Proteins & Proteomes

- Database

HAMAP SPARQL endpoint

Use HAMAP + SPARQL to generate portable annotation pipelines

- Proteins & Proteomes

- Database

VenomZone

Portal to venom protein UniProtKB entries

- Genomics
- Proteins & Proteomes

- Database

ABCD

Database of chemically defined antibodies

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