Categories: genomics, (characterisation/annotation), transcriptomics - Software type(s): website - database/tool
CLIPZ supports the automatic functional annotation of short reads resulting primarily from crosslinking and immunoprecipitation experiments (CLIP) performed with RNA-binding proteins in order to identify the binding sites of these proteins. The functional annotation could be also applied to short reads resulting from other type of experiments such as mRNA-Seq, Digital Gene Expression, small RNA cloning, etc. CLIPZ enables visualization, mining and analysis of data sets.