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HAMAP annotation rule: MF_01351

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General rule information

Accession MF_01351
Dates 23-JUN-2006 (Created)
30-JUN-2008 (Last updated, Version 26)
Data class Protein
Predictors HAMAP; MF_01351; [distribution of match scores in UniProtKB];[seed alignment for MF_01351]


Propagated annotation

Identifier, protein and gene names

case <OG:Chloroplast>
Identifier NDHI
Protein name
RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic;
EC=1.6.5.-;
AltName: Full=NAD(P)H dehydrogenase subunit I;
Short=NDH subunit I;
AltName: Full=NADH-plastoquinone oxidoreductase subunit I;
Gene name ndhI

else case <OC:Cyanobacteria>
Identifier NDHI
Protein name
RecName: Full=NAD(P)H-quinone oxidoreductase subunit I;
EC=1.6.5.-;
AltName: Full=NAD(P)H dehydrogenase I subunit I;
AltName: Full=NDH-1 subunit I;
Short=NDH-I;
Gene name ndhI

else
Identifier NUOI
Protein name
RecName: Full=NADH-quinone oxidoreductase subunit I;
EC=1.6.99.5;
AltName: Full=NADH dehydrogenase I subunit I;
AltName: Full=NDH-1 subunit I;
Gene name nuoI
end case

Comments

case <OG:Chloroplast>
FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (By similarity).

else case <OC:Cyanobacteria>
FUNCTION: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (By similarity).

else case <OC:Mycobacterium> or <OC:Rhodothermus>
FUNCTION: NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity).

else
FUNCTION: NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity).
end case


case <OG:Chloroplast> or <OC:Cyanobacteria>
CATALYTIC ACTIVITY: NAD(P)H + plastoquinone = NAD(P)(+) + plastoquinol.

else
CATALYTIC ACTIVITY: NADH + quinone = NAD(+) + quinol.
end case

COFACTOR: Binds 2 4Fe-4S clusters per subunit (By similarity).

case <OG:Chloroplast>
SUBUNIT: NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus (By similarity).

else case <OC:Cyanobacteria>
SUBUNIT: NDH-1 is composed of at least 11 different subunits (By similarity).

else case <OC:Enterobacteriaceae> or <OC:Shewanellaceae> or <OC:Pseudomonadaceae>
SUBUNIT: NDH-1 is composed of 13 different subunits. Subunits nuoA, H, J, K, L, M, N constitute the membrane sector of the complex (By similarity).

else case <OC:Deinococci>
SUBUNIT: NDH-1 is composed of 15 different subunits. Subunits nuoA, H, J, K, L, M, N constitute the membrane sector of the complex (By similarity).

else
SUBUNIT: NDH-1 is composed of 14 different subunits. Subunits nuoA, H, J, K, L, M, N constitute the membrane sector of the complex (By similarity).
end case


case <OG:Chloroplast>
SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane; Peripheral membrane protein (By similarity).

else case <Property:Thylakoid>
SUBCELLULAR LOCATION: Cellular thylakoid membrane; Peripheral membrane protein (By similarity).

else case <Property:Membrane=1>
SUBCELLULAR LOCATION: Cell membrane; Peripheral membrane protein (Potential).

else case <Property:Membrane=2>
SUBCELLULAR LOCATION: Cell inner membrane; Peripheral membrane protein (Potential).
end case

SIMILARITY: Belongs to the complex I 23 kDa subunit family.
Cross-references
Pfam PF00037; Fer4; 2;
PRINTS PR00353; 4FE4SFRDOXIN; 1;
PROSITE PS00198; 4FE4S_FER_1; 2;
PS51379; 4FE4S_FER_2; 2; trigger=PRU00711;
Keywords
NAD, Oxidoreductase, Quinone, 4Fe-4S, Iron, Iron-sulfur, Metal-binding, Membrane.

case <OG:Chloroplast> or <Property:Thylakoid>
Thylakoid.

else case <Property:Membrane=2>
Cell membrane, Cell inner membrane.

else
Cell membrane.
end case


case <OG:Chloroplast> or <OC:Cyanobacteria>
Plastoquinone, NADP.

else case not <OC:Mycobacterium> and not <OC:Rhodothermus> and not <OC:Archaea>
Ubiquinone.
end case

Gene Ontology
GO:0005506; Molecular function: iron ion binding.
GO:0055114; Biological process: oxidation reduction.

case <OG:Chloroplast> or <OC:Cyanobacteria>
GO:0016655; Molecular function: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor.

else
GO:0050136; Molecular function: NADH dehydrogenase (quinone) activity.
end case

GO:0019684; Biological process: photosynthesis, light reaction.

case <OG:Chloroplast>
GO:0009535; Cellular component: chloroplast thylakoid membrane.

else case <Property:Thylakoid>
GO:0042651; Cellular component: thylakoid membrane.

else case <Property:Membrane=1>
GO:0005886; Cellular component: plasma membrane.

else case <Property:Membrane=2>
GO:0005886; Cellular component: plasma membrane.
end case

Features
From: NQO9_THET8 (Q56224)
Key     From     To       Description   Condition   FTGroup
METAL     53     53       Iron-sulfur 1 (4Fe-4S) (By similarity)   C   1
METAL     56     56       Iron-sulfur 1 (4Fe-4S) (By similarity)   C   1
METAL     59     59       Iron-sulfur 1 (4Fe-4S) (By similarity)   C   1
 
METAL     63     63       Iron-sulfur 2 (4Fe-4S) (By similarity)   C   2
METAL     98     98       Iron-sulfur 2 (4Fe-4S) (By similarity)   C   2
METAL     101     101       Iron-sulfur 2 (4Fe-4S) (By similarity)   C   2
METAL     104     104       Iron-sulfur 2 (4Fe-4S) (By similarity)   C   2
 
METAL     108     108       Iron-sulfur 1 (4Fe-4S) (By similarity)   C   1


Additional information

Size range: 131-264 amino acids
Related UniRules: None
Template: Q56224 (NQO9_THET8); P0AFD6 (NUOI_ECOLI): [Recover all]
Scope: Bacteria
Plastid
Fusion: Nter: MF_01350 (nuoH); Cter: None
Duplicate: in ANADE, AQUAE, GEOMG, GEOSL, MYCPA, NITMU, NITOC, PELPD, RHIEC, RHIME, RHOP2, RHOP5, RHOPA, RHOPB, RHOPS, RHOS1, RHOS4, SOLUE, STRAW, STRCO, SYMTH, SYNFM
Plasmid encoded: None
Comments: In NOCFA is N-terminally fused with nuoH, another subunit of the same complex. See also comments on subunit composition in family MF_01350 (nuoH/ndhA). Thermus bacteria are annotated with another nomenclature.

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UniProtKB rule member sequences



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