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UniProtKB/Swiss-Prot entry Q9ZNR6


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name PDX12_ARATH
Primary accession number Q9ZNR6
Secondary accession number Q0WS48
Integrated into Swiss-Prot on March 15, 2004
Sequence was last modified on May 1, 1999 (Sequence version 1)
Annotations were last modified on    May 20, 2008 (Entry version 55)
Name and origin of the protein
Protein name Probable pyridoxal biosynthesis protein PDX1.2
Synonyms AtPDX1.2
AtPDX1;3
Gene name
Name: PDX12
Synonyms: A37, PDX1L2
OrderedLocusNames: At3g16050
ORFNames: MSL1.3
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND TISSUE SPECIFICITY.
STRAIN=cv. Columbia;
Oekresz L., Mathe C., Horvath E., Schell J., Koncz C., Szabados L.;
"T-DNA trapping of a cryptic promoter identifies an ortholog of highly conserved SNZ growth arrest response genes in Arabidopsis.";
Plant Sci. 138:217-228(1998).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1093/dnares/7.2.131; PubMed=10819329 [NCBI, ExPASy, EBI, Israel, Japan]
Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones.";
DNA Res. 7:131-135(2000).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
DOI=10.1126/science.1088305; PubMed=14593172 [NCBI, ExPASy, EBI, Israel, Japan]
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis genome.";
Science 302:842-846(2003).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[5]
FUNCTION, AND SUBCELLULAR LOCATION.
DOI=10.1073/pnas.0506228102; PubMed=16157873 [NCBI, ExPASy, EBI, Israel, Japan]
Tambasco-Studart M., Titiz O., Raschle T., Forster G., Amrhein N., Fitzpatrick T.B.;
"Vitamin B6 biosynthesis in higher plants.";
Proc. Natl. Acad. Sci. U.S.A. 102:13687-13692(2005).
[6]
TISSUE SPECIFICITY, AND INTERACTION WITH PDX1.1 AND PDX1.3.
STRAIN=cv. C24;
DOI=10.1105/tpc.105.036269; PubMed=16766694 [NCBI, ExPASy, EBI, Israel, Japan]
Wagner S., Bernhardt A., Leuendorf J.E., Drewke C., Lytovchenko A., Mujahed N., Gurgui C., Frommer W.B., Leistner E., Fernie A.R., Hellmann H.;
"Analysis of the Arabidopsis rsr4-1/pdx1-3 mutant reveals the critical function of the PDX1 protein family in metabolism, development, and vitamin B6 biosynthesis.";
Plant Cell 18:1722-1735(2006).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AF029980; AAD01897.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF029981; AAD01898.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AB012247; BAB02670.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BT003136; AAO24568.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK228092; BAF00051.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_188226.1; -.
UniGene At.7601
3D structure databases
ModBase Q9ZNR6.
Protein-protein interaction databases
IntAct Q9ZNR6; -.
Organism-specific databases
GeneFarm 3240; -.
TAIR At3g16050; -.
Gene expression databases
ArrayExpress Q9ZNR6; -.
GermOnline AT3G16050; Arabidopsis thaliana.
Ontologies
GO
GO:0005829; Cellular component: cytosol (inferred from direct assay from TAIR).
GO:0042802; Molecular function: identical protein binding (inferred from physical interaction from IntAct).
GO:0046982; Molecular function: protein heterodimerization activity (inferred from physical interaction from TAIR).
QuickGo view.
Family and domain databases
InterPro IPR001852; Snz1p/Sor1.
Graphical view of domain structure.
Pfam PF01680; SOR_SNZ; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF029271; Pdx1; 1.
ProDom PD004958; Snz1p/Sor1; 1.
[Domain structure / List of seq. sharing at least 1 domain]
PROSITE PS01235; PDXS_SNZ_1; 1.
PS51129; PDXS_SNZ_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q9ZNR6.
Genome annotation databases
GeneID 820850; -.
GenomeReviews BA000014_GR; AT3G16050.
KEGG ath:AT3G16050; -.
NMPDR fig|3702.1.peg.13774; -.
Other
ProtoNet Q9ZNR6.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Cytoplasm; Pyridoxine biosynthesis.
Features
SEVIEWER logo Feature table viewer
KeyFrom To Length Description FTId
CHAIN   1   314  314     Probable pyridoxal biosynthesis protein PDX1.2. PRO_0000109367
Sequence information
Length: 314 AA [This is the length of the unprocessed precursor] Molecular weight: 33836 Da [This is the MW of the unprocessed precursor] CRC64: D894BC393CBBBA6A [This is a checksum on the sequence]
        10         20         30         40         50         60 
MADQAMTDQD QGAVTLYSGT AITDAKKNHP FSVKVGLAQV LRGGAIVEVS SVNQAKLAES 

        70         80         90        100        110        120 
AGACSVIVSD PVRSRGGVRR MPDPVLIKEV KRAVSVPVMA RARVGHFVEA QILESLAVDY 

       130        140        150        160        170        180 
IDESEIISVA DDDHFINKHN FRSPFICGCR DTGEALRRIR EGAAMIRIQG DLTATGNIAE 

       190        200        210        220        230        240 
TVKNVRSLMG EVRVLNNMDD DEVFTFAKKI SAPYDLVAQT KQMGRVPVVQ FASGGITTPA 

       250        260        270        280        290        300 
DAALMMQLGC DGVFVGSEVF DGPDPFKKLR SIVQAVQHYN DPHVLAEMSS GLENAMESLN 

       310 
VRGDRIQDFG QGSV 

Q9ZNR6 in FASTA format

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Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
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