ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!
Search for

UniProtKB/Swiss-Prot entry Q9SWI1


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

Note: most headings are clickable, even if they don't appear as links. They link to the user manual or other documents.
Entry information
Entry name PKS1_ARATH
Primary accession number Q9SWI1
Secondary accession number O80610
Integrated into Swiss-Prot on May 10, 2002
Sequence was last modified on May 10, 2002 (Sequence version 2)
Annotations were last modified on    July 22, 2008 (Entry version 45)
Name and origin of the protein
Protein name Phytochrome kinase substrate 1
Synonyms None
Gene name
Name: PKS1
OrderedLocusNames: At2g02950
ORFNames: T17M13.12
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=cv. Columbia;
DOI=10.1126/science.284.5419.1539; PubMed=10348744 [NCBI, ExPASy, EBI, Israel, Japan]
Fankhauser C., Yeh K.C., Lagarias J.C., Zhang H., Elich T.D., Chory J.;
"PKS1, a substrate phosphorylated by phytochrome that modulates light signaling in Arabidopsis.";
Science 284:1539-1541(1999).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1038/45471; PubMed=10617197 [NCBI, ExPASy, EBI, Israel, Japan]
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
Nature 402:761-768(1999).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
DOI=10.1126/science.1088305; PubMed=14593172 [NCBI, ExPASy, EBI, Israel, Japan]
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis genome.";
Science 302:842-846(2003).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AF149053; AAD38033.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AC004138; AAC32913.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF325064; AAK17132.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY052708; AAK96612.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY063721; AAL36071.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR E84442; E84442.
T52304; T52304.
RefSeq NP_565292.1; -.
UniGene At.24751
3D structure databases
ModBase Q9SWI1.
Protein-protein interaction databases
IntAct Q9SWI1; -.
Organism-specific databases
TAIR At2g02950; -.
Gene expression databases
ArrayExpress Q9SWI1; -.
GermOnline AT2G02950; Arabidopsis thaliana.
Ontologies
GO
GO:0005515; Molecular function: protein binding (inferred from physical interaction from IntAct).
QuickGo view.
Family and domain databases
BLOCKS Q9SWI1.
Genome annotation databases
GeneID 814823; -.
GenomeReviews CT485783_GR; AT2G02950.
KEGG ath:AT2G02950; -.
NMPDR fig|3702.1.peg.7889; -.
Other
ProtoNet Q9SWI1.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Cytoplasm; Phosphoprotein; Phytochrome signaling pathway.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   439  439     Phytochrome kinase substrate 1. PRO_0000058450
COMPBIAS   31    34  4     Poly-Ser. 
COMPBIAS   365   369  5     Poly-Ser. 
CONFLICT   196   196        E -> D (in Ref. 1; AAD38033). 
Sequence information
Length: 439 AA [This is the length of the unprocessed precursor] Molecular weight: 48085 Da [This is the MW of the unprocessed precursor] CRC64: 7A0A825FF7D3F3FC [This is a checksum on the sequence]
        10         20         30         40         50         60 
MVTLTPSSAS TPKTSFDFMK NNNSHSSLYV SSSSYLSSKE DALVTTKKLM EPSKTLNMSI 

        70         80         90        100        110        120 
NPKQEEFGDE KKMVKKAPED PEIGVFGAEK YFNGDMDSDQ GSSVLSLTNP EVERTVVDSK 

       130        140        150        160        170        180 
QSAKKSTGTP SVRSESSWNS QSVLLQNKLV NSCNSSFKEK KNSNGQIQKV TNNKKSFLAN 

       190        200        210        220        230        240 
LGCKCACSDG DSVDVEEKTS VKRSADPNIS VITMRSSADM NTELIKIQKQ EELSQRKSLE 

       250        260        270        280        290        300 
VFGSPVAIEK KSSVVQKKLP LPPWKSRTEE DDTKSEGSDS SSDLFEIEGL TGNPKPFLTR 

       310        320        330        340        350        360 
QGSDPASPTC YAPSEVSVEW SIVTASAADF SVMSECATSP VRRNRPTQIP RIPITAKSAP 

       370        380        390        400        410        420 
QRRKSSSSSG GNGFLMSCKS HKSVMVSGDL DRRSSMNKTQ PSYVPRFPME TTKPKSFETR 

       430 
RRISNSSISH TQSSLLYSQ 

Q9SWI1 in FASTA format

View entry in original UniProtKB/Swiss-Prot format
View entry in raw text format (no links)
Report form for errors/updates in this UniProtKB/Swiss-Prot entry

BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA)
Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Submit a homology modeling request to SWISS-MODEL
NPSA logo NPSA Sequence analysis tools

ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
 Hosted by ch flag SIB Switzerland Mirror sites: Australia  Brazil  Canada  China  Korea
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!