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UniProtKB/Swiss-Prot entry Q9SQI2


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name GIGAN_ARATH
Primary accession number Q9SQI2
Secondary accession numbers O64381 O80545 Q9S7N0
Integrated into Swiss-Prot on December 5, 2001
Sequence was last modified on December 5, 2001 (Sequence version 2)
Annotations were last modified on    April 29, 2008 (Entry version 50)
Name and origin of the protein
Protein name Protein GIGANTEA
Synonyms None
Gene name
Name: GI
OrderedLocusNames: At1g22770
ORFNames: T22J18.6
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=cv. Columbia;
DOI=10.1093/emboj/18.17.4679; PubMed=10469647 [NCBI, ExPASy, EBI, Israel, Japan]
Fowler S., Lee K., Onouchi H., Samach A., Richardson K., Morris B., Coupland G., Putterill J.;
"GIGANTEA: a circadian clock-controlled gene that regulates photoperiodic flowering in Arabidopsis and encodes a protein with several possible membrane-spanning domains.";
EMBO J. 18:4679-4688(1999).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=cv. Columbia;
TISSUE=Leaf, and Stem;
DOI=10.1126/science.285.5433.1579; PubMed=10477524 [NCBI, ExPASy, EBI, Israel, Japan]
Park D.H., Somers D.E., Kim Y.S., Choy Y.H., Lim H.K., Soh M.S., Kim H.J., Kay S.A., Nam H.G.;
"Control of circadian rhythms and photoperiodic flowering by the Arabidopsis GIGANTEA gene.";
Science 285:1579-1582(1999).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1016/S0014-5793(97)01190-3; PubMed=9369203 [NCBI, ExPASy, EBI, Israel, Japan]
Terryn N., Neyt P., de Clercq R., de Keyser A., van den Daele H., Ardiles W., Dehais P., Rouze P., Gielen J., Villarroel R., van Montagu M.;
"Sequence analysis of a 24-kb contiguous genomic region at the Arabidopsis thaliana PFL locus on chromosome 1.";
FEBS Lett. 416:156-160(1997).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1038/35048500; PubMed=11130712 [NCBI, ExPASy, EBI, Israel, Japan]
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
Nature 408:816-820(2000).
[5]
FUNCTION, AND SUBCELLULAR LOCATION.
DOI=10.1073/pnas.170283997; PubMed=10920210 [NCBI, ExPASy, EBI, Israel, Japan]
Huq E., Tepperman J.M., Quail P.H.;
"GIGANTEA is a nuclear protein involved in phytochrome signaling in Arabidopsis.";
Proc. Natl. Acad. Sci. U.S.A. 97:9789-9794(2000).
[6]
INTERACTION WITH SPY.
DOI=10.1105/tpc.019224; PubMed=15155885 [NCBI, ExPASy, EBI, Israel, Japan]
Tseng T.-S., Salome P.A., McClung C.R., Olszewski N.E.;
"SPINDLY and GIGANTEA interact and act in Arabidopsis thaliana pathways involved in light responses, flowering, and rhythms in cotyledon movements.";
Plant Cell 16:1550-1563(2004).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AJ133786; CAB56039.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF105064; AAF00092.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF076686; AAF00023.1; ALT_SEQ; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
Y12227; CAA72908.1; ALT_SEQ; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AC003979; AAC25507.1; ALT_SEQ; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR T52575; T52575.
RefSeq NP_564180.1; -.
UniGene At.209
3D structure databases
ModBase Q9SQI2.
Protein-protein interaction databases
IntAct Q9SQI2; -.
Organism-specific databases
TAIR At1g22770; -.
Gene expression databases
ArrayExpress Q9SQI2; -.
GermOnline AT1G22770; Arabidopsis thaliana.
Ontologies
GO
GO:0005515; Molecular function: protein binding (inferred from physical interaction from IntAct).
QuickGo view.
Family and domain databases
BLOCKS Q9SQI2.
Genome annotation databases
GeneID 838883; -.
GenomeReviews CT485782_GR; AT1G22770.
KEGG ath:AT1G22770; -.
NMPDR fig|3702.1.peg.2647; -.
Other
ProtoNet Q9SQI2.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Biological rhythms; Complete proteome; Developmental protein; Differentiation; Flowering; Nucleus; Phytochrome signaling pathway.
Features
SEVIEWER logo Feature table viewer
KeyFrom To Length Description FTId
CHAIN   1   1173  1173     Protein GIGANTEA. PRO_0000087489
Sequence information
Length: 1173 AA [This is the length of the unprocessed precursor] Molecular weight: 127876 Da [This is the MW of the unprocessed precursor] CRC64: 71CFDE7D39E73549 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ 

        70         80         90        100        110        120 
YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL VYSKEAHPFA SFISLVCPSS 

       130        140        150        160        170        180 
ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT 

       190        200        210        220        230        240 
QHERKPLRPL SPWISDILLA APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ 

       250        260        270        280        290        300 
LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA 

       310        320        330        340        350        360 
LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR 

       370        380        390        400        410        420 
LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP ALLFPPLSQV EGVEIQHAPI 

       430        440        450        460        470        480 
GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV 

       490        500        510        520        530        540 
DLPEIIVATP LQPPILSWNL YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE 

       550        560        570        580        590        600 
SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE 

       610        620        630        640        650        660 
AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA 

       670        680        690        700        710        720 
CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG IDSAISHTRR ILAILEALFS 

       730        740        750        760        770        780 
LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL 

       790        800        810        820        830        840 
YNLIDVHSKV VASIVDKAEP LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS 

       850        860        870        880        890        900 
RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS 

       910        920        930        940        950        960 
VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA 

       970        980        990       1000       1010       1020 
VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN HDRPESLVIL ASASDLLLRA 

      1030       1040       1050       1060       1070       1080 
TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH 

      1090       1100       1110       1120       1130       1140 
PSAHVRALST SVLRDIMNQS SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC 

      1150       1160       1170 
LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ 

Q9SQI2 in FASTA format

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View entry in raw text format (no links)
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